Representative Sets of DNA 3D Structures
Release 0.19, 2011-05-28
Exact match 67; New id, 1 parent 14; Updated, 1 parent 5; New id, > 2 parents 7; Updated, 2 parents 2; New id, 2 parents 2;
# | Equivalence class | Representative | Resolution | Nts | Class members | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | DNA_1.5_77601.1 Exact match | 3MBS|1|B (3MBS)
| 1.3 Å | 77 | (1) 3MBS|1|B | NULL | NULL |
2 | DNA_1.5_95251.1 Exact match | 3MBS|1|A (3MBS)
| 1.3 Å | 72 | (1) 3MBS|1|A | NULL | NULL |
3 | DNA_1.5_09695.1 Exact match | 3MBS|1|C (3MBS)
| 1.3 Å | 69 | (1) 3MBS|1|C | NULL | NULL |
4 | DNA_1.5_86693.1 Exact match | 3MBS|1|D (3MBS)
| 1.3 Å | 69 | (1) 3MBS|1|D | NULL | NULL |
5 | DNA_1.5_10832.1 New id, > 2 parents | 1EGW|1|E+1EGW|1|F (1EGW)
| 1.5 Å | 17 | (2) 1EGW|1|E+1EGW|1|F, 1EGW|1|G+1EGW|1|H | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription |
6 | DNA_1.5_71834.4 Updated, 1 parent | 1DFM|1|C+1DFM|1|D (1DFM)
| 1.5 Å | 16 | (2) 1DFM|1|C+1DFM|1|D, 1DP7|1|D | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
7 | DNA_1.5_45969.3 Updated, 1 parent | 1MNN|1|B+1MNN|1|C (1MNN)
| 1.4 Å | 14 | (1) 1MNN|1|B+1MNN|1|C | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
8 | DNA_1.5_10786.8 Updated, 1 parent | 3O1T|1|C+3O1T|1|B (3O1T)
| 1.5 Å | 13 | (6) 3O1T|1|C+3O1T|1|B, 1PUY|1|A, 1PUY|1|B, 1K3X|1|B+1K3X|1|C, 1K3W|1|B+1K3W|1|C, 1LLM|1|A+1LLM|1|B | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
9 | DNA_1.5_11714.1 Exact match | 1JES|1|A+1JES|1|B (1JES)
| 1.5 Å | 12 | (1) 1JES|1|A+1JES|1|B | Z-form double helix,double helix,structure | NULL |
10 | DNA_1.5_30372.1 Exact match | 3NZ7|1|A (3NZ7)
| 1.1 Å | 12 | (2) 3NZ7|1|A, 3NYP|1|A | function,quadruplex,structure,telomeric DNA | NULL |
11 | DNA_1.5_49415.1 Exact match | 2O1I|1|A (2O1I)
| 1.1 Å | 12 | (1) 2O1I|1|A | double helix,intercalating,ligand,structure | NULL |
12 | DNA_1.5_51692.1 New id, > 2 parents | 1FQ2|1|A+1FQ2|1|B (1FQ2)
| 1.2 Å | 12 | (25) 1FQ2|1|A+1FQ2|1|B, 1N1O|1|A+1N1O|1|B, 1DC0|1|A+1DC0|1|B, 1DPN|1|A+1DPN|1|B, 2FII|1|A+2FII|1|B, 3FDE|1|C+3FDE|1|F, 3FDE|1|D+3FDE|1|E, 3EY3|1|A+3EY3|1|B, 3EY3|1|C+3EY3|1|D, 1EI4|1|A+1EI4|1|B, 2FIH|1|A+2FIH|1|B, 2B3E|1|A+2B3E|1|B, 455D|1|A+455D|1|B, 436D|1|A+436D|1|B, 2DYW|1|A+2DYW|1|B, 460D|1|A+460D|1|B, 1JGR|1|A+1JGR|1|B, 2VLA|1|L+2VLA|1|M, 403D|1|A+403D|1|B, 355D|1|A+355D|1|B, 2EA0|1|B+2EA0|1|C, 463D|1|A+463D|1|B, 2DPB|1|A+2DPB|1|B, 461D|1|A+461D|1|B, 3JXY|1|B+3JXY|1|C | A-form double helix,double helix,structure | NULL |
13 | DNA_1.5_87929.1 Exact match | 3NZ7|1|B (3NZ7)
| 1.1 Å | 12 | (2) 3NZ7|1|B, 3NYP|1|B | function,quadruplex,structure,telomeric DNA | NULL |
14 | DNA_1.5_03248.1 New id, 1 parent | 2ODI|1|C+2ODI|1|D+2ODI|1|E+2ODI|1|F (2ODI)
| 1.5 Å | 11 | (1) 2ODI|1|C+2ODI|1|D+2ODI|1|E+2ODI|1|F | NULL | enzyme,hydrolase,nuclease |
15 | DNA_1.5_24493.1 Exact match | 2AVH|1|A (2AVH)
| 1.5 Å | 11 | (1) 2AVH|1|A | quadruplex,structure | NULL |
16 | DNA_1.5_36608.1 New id, 1 parent | 2NQ9|1|D+2NQ9|1|B+2NQ9|1|C (2NQ9)
| 1.5 Å | 11 | (1) 2NQ9|1|D+2NQ9|1|B+2NQ9|1|C | NULL | enzyme,hydrolase,nuclease |
17 | DNA_1.5_40903.5 Updated, 1 parent | 476D|1|A+476D|1|B (476D)
| 1.3 Å | 11 | (2) 476D|1|A+476D|1|B, 3GOX|1|C+3GOX|1|D | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
18 | DNA_1.5_67801.1 Exact match | 3NDH|1|C+3NDH|1|D (3NDH)
| 1.3 Å | 11 | (1) 3NDH|1|C+3NDH|1|D | double helix,structure | enzyme,hydrolase,nuclease |
19 | DNA_1.5_68387.1 New id, 1 parent | 2OAA|1|C+2OAA|1|D+2OAA|1|E+2OAA|1|F (2OAA)
| 1.5 Å | 11 | (1) 2OAA|1|C+2OAA|1|D+2OAA|1|E+2OAA|1|F | double helix,structure | enzyme,hydrolase,nuclease |
20 | DNA_1.5_02779.1 Exact match | 1PJG|1|A (1PJG)
| 1.2 Å | 10 | (3) 1PJG|1|A, 1PJO|1|A, 1G4Q|1|A | A-form double helix,double helix,structure | NULL |
21 | DNA_1.5_06641.1 Exact match | 1I0M|1|A+1I0M|1|B (1I0M)
| 1.1 Å | 10 | (1) 1I0M|1|A+1I0M|1|B | A-form double helix,double helix,structure | NULL |
22 | DNA_1.5_12105.1 Exact match | 1I0Q|1|A+1I0Q|1|B (1I0Q)
| 1.3 Å | 10 | (1) 1I0Q|1|A+1I0Q|1|B | A-form double helix,double helix,structure | NULL |
23 | DNA_1.5_21527.1 New id, 1 parent | 232D|1|A (232D)
| 1.3 Å | 10 | (2) 232D|1|A, 441D|1|A | A-form double helix,double helix,structure | NULL |
24 | DNA_1.5_32371.1 Exact match | 1I0P|1|A+1I0P|1|B (1I0P)
| 1.3 Å | 10 | (1) 1I0P|1|A+1I0P|1|B | A-form double helix,double helix,structure | NULL |
25 | DNA_1.5_38986.1 Exact match | 1I0K|1|A+1I0K|1|B (1I0K)
| 1.1 Å | 10 | (1) 1I0K|1|A+1I0K|1|B | A-form double helix,double helix,structure | NULL |
26 | DNA_1.5_57772.1 New id, > 2 parents | 3OMJ|1|A+3OMJ|1|B (3OMJ)
| 1.0 Å | 10 | (44) 3OMJ|1|A+3OMJ|1|B, 1KGK|1|A+1KGK|1|B, 1DPL|1|A+1DPL|1|B, 3I5E|1|A, 1EN8|1|A, 1ENE|1|A, 3I5L|1|A+3I5L|1|B, 3EY2|1|A+3EY2|1|B, 1EN9|1|A, 1EN3|1|A, 1MLX|1|A+1MLX|1|B, 3OZ5|1|A+3OZ5|1|B, 2FIJ|1|A+2FIJ|1|B, 1M77|1|A, 1PWF|1|A+1PWF|1|B, 1R3G|1|A+1R3G|1|B, 1I5W|1|A+1I5W|1|B, 1Y8L|1|A+1Y8L|1|B, 1Y8V|1|A+1Y8V|1|B, 1I0J|1|A+1I0J|1|B, 1ZF1|1|A+1ZF1|1|B, 1ZF9|1|A+1ZF9|1|B, 1ZF7|1|A+1ZF7|1|B, 1ZF8|1|A+1ZF8|1|B, 1NVY|1|A+1NVY|1|B, 1ZF0|1|A+1ZF0|1|B, 1ZF5|1|A, 1L6B|1|A+1L6B|1|B, 1ZF6|1|A+1ZF6|1|B, 1ZFF|1|A, 3GGK|1|A, 1SK5|1|A+1SK5|1|B, 3GGI|1|A, 440D|1|A+440D|1|B, 431D|1|A+431D|1|B, 1XUW|1|A+1XUW|1|B, 1XUX|1|A+1XUX|1|B, 1D61|1|A, 3DNB|1|A, 1MA8|1|A+1MA8|1|B, 1XUX|1|C+1XUX|1|D, 5DNB|1|A, 1D49|1|A+1D49|1|B, 1D23|1|A+1D23|1|B | B-form double helix,double helix,structure | NULL |
27 | DNA_1.5_58393.1 Exact match | 1I0N|1|A+1I0N|1|B (1I0N)
| 1.3 Å | 10 | (1) 1I0N|1|A+1I0N|1|B | A-form double helix,double helix,structure | NULL |
28 | DNA_1.5_64002.1 Exact match | 1I0G|1|A+1I0G|1|B (1I0G)
| 1.5 Å | 10 | (1) 1I0G|1|A+1I0G|1|B | A-form double helix,double helix,structure | NULL |
29 | DNA_1.5_77072.1 Exact match | 1D8G|1|A (1D8G)
| 0.7 Å | 10 | (1) 1D8G|1|A | B-form double helix,double helix,structure | NULL |
30 | DNA_1.5_92720.1 New id, 1 parent | 2B2B|1|A+2B2B|1|B (2B2B)
| 1.5 Å | 10 | (1) 2B2B|1|A+2B2B|1|B | Holliday junction,structure | NULL |
31 | DNA_1.5_99269.1 New id, 1 parent | 1D8X|1|A+1D8X|1|B (1D8X)
| 1.2 Å | 10 | (2) 1D8X|1|A+1D8X|1|B, 1D9R|1|A+1D9R|1|B | double helix,feature,mispair,structure | NULL |
32 | DNA_1.5_06452.2 Updated, 2 parents | 1ENN|1|A+1ENN|1|B (1ENN)
| 0.9 Å | 9 | (1) 1ENN|1|A+1ENN|1|B | B-form double helix,double helix,structure | NULL |
33 | DNA_1.5_79679.1 New id, 2 parents | 1UE2|1|A (1UE2)
| 1.4 Å | 9 | (1) 1UE2|1|A | NULL | NULL |
34 | DNA_1.5_02194.1 New id, 1 parent | 454D|1|A+454D|1|B (454D)
| 1.2 Å | 8 | (5) 454D|1|A+454D|1|B, 454D|1|C+454D|1|D, 454D|1|E+454D|1|F, 454D|1|G+454D|1|H, 454D|1|I+454D|1|J | B-form double helix,double helix,structure | NULL |
35 | DNA_1.5_13288.1 Exact match | 284D|1|A+284D|1|B (284D)
| 1.1 Å | 8 | (1) 284D|1|A+284D|1|B | cyclic,feature,structure | NULL |
36 | DNA_1.5_29338.1 New id, > 2 parents | 1PFE|1|A (1PFE)
| 1.1 Å | 8 | (4) 1PFE|1|A, 1XVK|1|A, 3GO3|1|A+3GO3|1|B, 1XVN|1|A | bis-intercalating,double helix,ligand,structure | NULL |
37 | DNA_1.5_37578.1 New id, > 2 parents | 2HC7|1|A (2HC7)
| 1.4 Å | 8 | (20) 2HC7|1|A, 3HG8|1|A, 1Z7I|1|A, 3IFI|1|A, 3IKI|1|A, 3LTU|1|A, 3IJK|1|A, 3LTR|1|A, 2NSK|1|A, 3K18|1|A, 1WTO|1|B+1WTO|1|C, 1XYI|1|B+1XYI|1|C, 1D78|1|A, 2PLO|1|A+2PLO|1|B, 1D79|1|A, 1C8C|1|B+1C8C|1|C, 344D|1|A, 3FA1|1|A, 2DLJ|1|A, 295D|1|A | double helix,feature,mispair,structure | chromatin,nucleosome,structural |
38 | DNA_1.5_02263.2 Updated, 2 parents | 3EYI|1|C+3EYI|1|D (3EYI)
| 1.5 Å | 7 | (1) 3EYI|1|C+3EYI|1|D | Z-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
39 | DNA_1.5_21798.1 Exact match | 3FL6|1|C+3FL6|1|D (3FL6)
| 1.2 Å | 7 | (1) 3FL6|1|C+3FL6|1|D | B-form double helix,double helix,structure | NULL |
40 | DNA_1.5_55380.1 Exact match | 3FL6|1|A+3FL6|1|B (3FL6)
| 1.2 Å | 7 | (1) 3FL6|1|A+3FL6|1|B | B-form double helix,double helix,structure | NULL |
41 | DNA_1.5_58330.1 New id, > 2 parents | 1MF5|1|A (1MF5)
| 1.1 Å | 7 | (5) 1MF5|1|A, 1MF5|1|B, 1QYL|1|A, 1QYK|1|A, 1QYK|1|B | quadruplex,structure | NULL |
42 | DNA_1.5_15323.1 Exact match | 2HAX|1|C (2HAX)
| 1.3 Å | 6 | (2) 2HAX|1|C, 2HAX|1|D | NULL | regulatory,transcription |
43 | DNA_1.5_31423.1 Exact match | 1VRO|1|A+1VRO|1|B (1VRO)
| 1.1 Å | 6 | (30) 1VRO|1|A+1VRO|1|B, 2F8W|1|A+2F8W|1|B, 2OBZ|1|A+2OBZ|1|B, 1WOE|1|A+1WOE|1|B, 1I0T|1|A+1I0T|1|B, 2DCG|1|A+2DCG|1|B, 1ICK|1|A+1ICK|1|B, 293D|1|A+293D|1|B, 292D|1|A+292D|1|B, 336D|1|A+336D|1|B, 131D|1|A+131D|1|B, 1D48|1|A+1D48|1|B, 1DJ6|1|A+1DJ6|1|B, 1DCG|1|A+1DCG|1|B, 2ELG|1|A+2ELG|1|B, 1D39|1|A+1D39|1|B, 145D|1|A+145D|1|B, 145D|1|C+145D|1|D, 1D41|1|A, 1D40|1|A, 1D76|1|A+1D76|1|B, 362D|1|A+362D|1|B, 1OMK|1|A+1OMK|1|B, 1D40|1|B, 1D41|1|B, 210D|1|A, 1DN5|1|A, 1DN5|1|B, 417D|1|A+417D|1|B, 1DNF|1|A+1DNF|1|B | Z-form double helix,double helix,structure | NULL |
44 | DNA_1.5_33031.1 Exact match | 352D|1|K (352D)
| 1.0 Å | 6 | (1) 352D|1|K | quadruplex,structure | NULL |
45 | DNA_1.5_36504.1 Exact match | 1XVR|1|A+1XVR|1|C (1XVR)
| 1.4 Å | 6 | (1) 1XVR|1|A+1XVR|1|C | bis-intercalating,double helix,ligand,structure | NULL |
46 | DNA_1.5_71530.1 Exact match | 427D|1|A (427D)
| 1.1 Å | 6 | (1) 427D|1|A | B-form double helix,double helix,structure | NULL |
47 | DNA_1.5_75315.1 New id, > 2 parents | 1EM0|1|A+1EM0|1|B (1EM0)
| 0.9 Å | 6 | (78) 1EM0|1|A+1EM0|1|B, 1EM0|1|C+1EM0|1|D, 1M69|1|A, 1O0K|1|A, 1O0K|1|B, 1O0K|1|C, 1O0K|1|D, 3FT6|1|A+3FT6|1|B, 2O4F|1|A, 2O4F|1|B, 2O4F|1|C, 2O4F|1|D, 2O4F|1|E, 2O4F|1|F, 2O4F|1|G, 2O4F|1|H, 1XCS|1|A+1XCS|1|B, 1Z3F|1|A+1Z3F|1|B, 1R68|1|A, 352D|1|A, 352D|1|B, 352D|1|C, 352D|1|D, 352D|1|E, 352D|1|F, 352D|1|G, 352D|1|H, 352D|1|I, 352D|1|J, 352D|1|L, 352D|1|M, 352D|1|N, 352D|1|O, 352D|1|P, 1FD5|1|A+1FD5|1|B, 1D11|1|A, 367D|1|A+367D|1|B, 244D|1|A, 244D|1|B, 244D|1|C, 244D|1|D, 244D|1|E, 244D|1|F, 244D|1|G, 244D|1|H, 244D|1|I, 244D|1|J, 244D|1|K, 244D|1|L, 244D|1|M, 244D|1|N, 244D|1|O, 244D|1|P, 1D35|1|A, 366D|1|A, 1P20|1|A, 151D|1|A, 1K9G|1|A, 1D54|1|A, 2D34|1|A, 224D|1|A+224D|1|B, 245D|1|A+245D|1|B, 152D|1|A, 1IH6|1|A+1IH6|1|B, 1IH6|1|C+1IH6|1|D, 1IH6|1|E+1IH6|1|F, 1IH6|1|G+1IH6|1|H, 2DES|1|A+2DES|1|B, 308D|1|A+308D|1|B, 1D14|1|A, 1IMS|1|A, 1DA0|1|A, 1D15|1|A, 1D10|1|A, 1D36|1|A, 1D33|1|A, 1SX5|1|C+1SX5|1|F, 1SX5|1|E+1SX5|1|D | B-form double helix,double helix,structure | NULL |
48 | DNA_1.5_14234.1 Exact match | 191D|1|B (191D)
| 1.4 Å | 4 | (1) 191D|1|B | I-motif,parallel helix,structure | NULL |
49 | DNA_1.5_26196.1 Exact match | 191D|1|C (191D)
| 1.4 Å | 4 | (1) 191D|1|C | I-motif,parallel helix,structure | NULL |
50 | DNA_1.5_29997.1 Exact match | 191D|1|D (191D)
| 1.4 Å | 4 | (1) 191D|1|D | I-motif,parallel helix,structure | NULL |
51 | DNA_1.5_56349.1 New id, 2 parents | 1ZNA|1|A+1ZNA|1|B (1ZNA)
| 1.5 Å | 4 | (2) 1ZNA|1|A+1ZNA|1|B, 1D53|1|C+1D53|1|D | Z-form double helix,double helix,structure | NULL |
52 | DNA_1.5_66077.1 Exact match | 191D|1|A (191D)
| 1.4 Å | 4 | (1) 191D|1|A | I-motif,parallel helix,structure | NULL |
53 | DNA_1.5_34464.1 Exact match | 1O55|1|B (1O55)
| 1.0 Å | 3 | (1) 1O55|1|B | cyclic,feature,structure | NULL |
54 | DNA_1.5_65956.1 Exact match | 1O56|1|A (1O56)
| 0.9 Å | 3 | (1) 1O56|1|A | cyclic,feature,structure | NULL |
55 | DNA_1.5_70453.1 Exact match | 3I3M|1|B (3I3M)
| 1.5 Å | 3 | (1) 3I3M|1|B | NULL | enzyme,oxidoreductase |
56 | DNA_1.5_75593.1 Exact match | 1O55|1|A (1O55)
| 1.0 Å | 3 | (1) 1O55|1|A | cyclic,feature,structure | NULL |
57 | DNA_1.5_84668.1 Exact match | 1O56|1|B (1O56)
| 0.9 Å | 3 | (1) 1O56|1|B | cyclic,feature,structure | NULL |
58 | DNA_1.5_06871.3 Exact match | 3BBB|1|G (3BBB)
| 1.3 Å | 2 | (6) 3BBB|1|G, 3BBB|1|H, 3BBB|1|I, 3BBB|1|J, 1DN8|1|A+1DN8|1|B, 1D53|1|A+1D53|1|B | Z-form double helix,double helix,structure | NULL |