Hairpin Loop Motif Atlas Release 4.35

#	Motif	Num Nts	Instances
1	HL_12062.2 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match GNRA (152) Other HL (31) GNRA with GA tSW pair (2)	6	209
2	HL_75291.2 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match T-loop with 2 stacked bulged bases (63) T-loop with 1 bulged base (7) T-loop with 2 bulged bases not stacked (6) Other HL (2)	7	80
3	HL_93381.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	35
4	HL_64343.2 View exemplar Basepair signature: cWW-tSW-F History status: Exact match UNCG (26) Other HL (1)	5	32
5	HL_10129.1 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match GNRA with one bulged base (9) Other HL (2) GNRA (1)	6	23
6	HL_45482.1 View exemplar Basepair signature: cWW-tSH-L-L-L-L History status: Exact match	8	22
7	HL_81509.1 View exemplar Basepair signature: cWW-L-L-L-L History status: Exact match Other HL (1)	6	21
8	HL_40237.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (15) Varkud satellite (VS) ribozyme helix 1 (1) Lariat-capping (LC) ribozyme DP2.1 hairpin (1)	9	20
9	HL_44252.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	16
10	HL_56040.2 View exemplar Basepair signature: cWW-F History status: Exact match	3	15
11	HL_89077.1 View exemplar Basepair signature: cWW-tWH-L-L History status: Exact match	6	14
12	HL_11577.1 View exemplar Basepair signature: cWW-cWS-L History status: Exact match	5	13
13	HL_94303.1 View exemplar Basepair signature: cWW-L-L-L History status: Exact match	5	13
14	HL_67331.1 View exemplar Basepair signature: cWW-L-L-L History status: Exact match	5	11
15	HL_79782.1 View exemplar Basepair signature: cWW-L-L-L History status: Exact match	5	11
16	HL_64360.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match GNRA (1)	5	11
17	HL_15100.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Other HL (2)	5	11
18	HL_49005.1 View exemplar Basepair signature: cWW-L-cSW-cSH-L-L History status: Exact match	9	10
19	HL_80753.1 View exemplar Basepair signature: cWW-cSW-L-L-L-L History status: Exact match tRNA anticodon loop (2)	8	10
20	HL_37991.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	10
21	HL_85771.1 View exemplar Basepair signature: cWW-cWW-L-L-L History status: Exact match T-loop with 1 bulged base (1)	7	10
22	HL_39654.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L History status: Exact match	10	9
23	HL_36187.1 View exemplar Basepair signature: cWW-L-L History status: Exact match Other HL (1)	4	9
24	HL_05880.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	9
25	HL_18180.1 View exemplar Basepair signature: cWW-cWW-L-L-L History status: Exact match	7	9
26	HL_82328.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	8
27	HL_58622.1 View exemplar Basepair signature: cWW-F-F History status: Exact match Other HL (5) GNRA (1)	4	8
28	HL_29188.1 View exemplar Basepair signature: cWW-L-L-L-L History status: Exact match	6	8
29	HL_33254.1 View exemplar Basepair signature: cWW-cWW-L History status: Exact match Other HL (1)	5	8
30	HL_93404.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	8
31	HL_11898.1 View exemplar Basepair signature: cWW-tWH-L-L-L-L-L History status: Exact match T-loop with 2 stacked bulged bases (5)	9	8
32	HL_94510.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match Ribsomal LSU H95 (3)	6	8
33	HL_49654.2 View exemplar Basepair signature: cWW-L-cSS-L-L History status: Exact match	7	7
34	HL_18703.2 View exemplar Basepair signature: cWW-F History status: Exact match	3	7
35	HL_34200.1 View exemplar Basepair signature: cWW-cWH-tWH-tSH-tSH-tHW-tHW-tSW-cWH History status: Exact match	13	7
36	HL_49562.1 View exemplar Basepair signature: cWW-tSH-L-L History status: Exact match	6	7
37	HL_36055.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L History status: Exact match	8	7
38	HL_44723.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match UNCG (1)	5	6
39	HL_14927.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	6
40	HL_75687.1 View exemplar Basepair signature: cWW-tSH-tHH-tWW-L-L-L History status: Exact match	11	6
41	HL_45573.1 View exemplar Basepair signature: cWW-tSH-L-L-L-L-L History status: Exact match	9	6
42	HL_77241.1 View exemplar Basepair signature: cWW-tSH-L-L History status: Exact match	6	6
43	HL_38423.1 View exemplar Basepair signature: cWW-tSH-L History status: Exact match	5	6
44	HL_53460.2 View exemplar Basepair signature: cWW-L-cSH History status: Exact match tRNA Sec D-loop (4) CRISPR-Cas9 crRNA hairpin 4 (1)	5	6
45	HL_16444.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	6
46	HL_52943.1 View exemplar Basepair signature: cWW-tWH-tWH-L History status: Exact match	7	6
47	HL_55630.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-L-L-L History status: Exact match	13	6
48	HL_45812.1 View exemplar Basepair signature: cWW-tWH-L-L-L History status: Exact match	7	5
49	HL_92085.1 View exemplar Basepair signature: cWW-tSW-L History status: Exact match	5	5
50	HL_46298.1 View exemplar Basepair signature: cWW-L-L-L-cSH-L-L-L History status: Exact match	10	5
51	HL_35282.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	5
52	HL_67876.1 View exemplar Basepair signature: cWW History status: Exact match	2	5
53	HL_97647.1 View exemplar Basepair signature: cWW-L-L History status: Exact match	4	5
54	HL_38143.1 View exemplar Basepair signature: cWW-cWS-L-L-L History status: Exact match	7	5
55	HL_65558.1 View exemplar Basepair signature: cWW-tSS History status: Exact match	4	5
56	HL_80716.1 View exemplar Basepair signature: cWW-cWS-tSW History status: Exact match tRNA Met D-loop (1)	6	5
57	HL_63600.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	5
58	HL_16506.2 View exemplar Basepair signature: cWW-cWS-F History status: Exact match	5	5
59	HL_81136.1 View exemplar Basepair signature: cWW-tWH-tSH-L-L History status: Exact match	8	5
60	HL_64650.1 View exemplar Basepair signature: cWW-tSH History status: Exact match	4	5
61	HL_61003.1 View exemplar Basepair signature: cWW-cWS-tSH-cWS-L History status: Exact match tRNA Leu D-loop (5)	8	5
62	HL_96100.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	5
63	HL_92603.1 View exemplar Basepair signature: cWW-tSW-L-L-cWS History status: Exact match	7	5
64	HL_74942.2 View exemplar Basepair signature: cWW-cWW-L-cSS-L-L-L History status: Exact match	10	4
65	HL_42245.1 View exemplar Basepair signature: cWW-L-L-L History status: Exact match Other HL (1)	5	4
66	HL_18255.2 View exemplar Basepair signature: cWW-tHW-F-F-F History status: Exact match	7	4
67	HL_54074.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L History status: Exact match	11	4
68	HL_13847.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L History status: Exact match	8	4
69	HL_14174.3 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	4
70	HL_14083.1 View exemplar Basepair signature: cWW-tSH-L-L-L-L-L History status: Exact match	9	4
71	HL_08078.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L History status: Exact match	9	4
72	HL_64086.1 View exemplar Basepair signature: cWW-L-L-L-L History status: Exact match	6	4
73	HL_92797.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (1)	9	3
74	HL_01331.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cSH-L History status: Exact match	11	3
75	HL_34740.1 View exemplar Basepair signature: cWW-cWH-L History status: Exact match	5	3
76	HL_95809.1 View exemplar Basepair signature: cWW-L-L History status: Exact match	4	3
77	HL_65701.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L History status: Exact match	10	3
78	HL_91636.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L History status: Exact match	11	3
79	HL_86918.1 View exemplar Basepair signature: cWW-L-L History status: Exact match	4	3
80	HL_64521.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L History status: Exact match Turnip yellow mosaic virus TLS RNA anticodon loop (1)	9	3
81	HL_72085.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tWH-L-L-L History status: Exact match	12	3
82	HL_40057.1 View exemplar Basepair signature: cWW-L-cSS-cSH History status: Exact match	7	3
83	HL_52271.2 View exemplar Basepair signature: cWW-tSH-L-L-L-L-L History status: Exact match	9	3
84	HL_61884.1 View exemplar Basepair signature: cWW-cWW-cWS-L-L History status: Exact match	8	3
85	HL_72584.1 View exemplar Basepair signature: cWW-L-L-L-L History status: Exact match	6	3
86	HL_85766.1 View exemplar Basepair signature: cWW History status: Exact match	2	3
87	HL_03614.1 View exemplar Basepair signature: cWW-L-L History status: Exact match	4	3
88	HL_62176.1 View exemplar Basepair signature: cWW-tWW-L-L-L History status: Exact match	7	3
89	HL_41884.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	2
90	HL_70915.1 View exemplar Basepair signature: cWW-L-L-L-L-L History status: Exact match	7	2
91	HL_49030.1 View exemplar Basepair signature: cWW-L-L-L History status: Exact match	6	2
92	HL_53324.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-L-L-L-L-L-L History status: Exact match	14	2
93	HL_52538.1 View exemplar Basepair signature: cWW-L-tSH-L-L History status: Exact match	7	2
94	HL_25902.1 View exemplar Basepair signature: cWW-cWW-tWH-L-L History status: Exact match	8	2
95	HL_79239.1 View exemplar Basepair signature: cWW-cWW-tWW-L-L-L-L History status: Exact match	10	2
96	HL_50187.1 View exemplar Basepair signature: cWW-L-L-L History status: Exact match	5	2
97	HL_29945.1 View exemplar Basepair signature: cWW-tSH-tHH History status: Exact match	6	2
98	HL_40467.1 View exemplar Basepair signature: cWW-L-L-L-L History status: Exact match	6	2
99	HL_07630.1 View exemplar Basepair signature: cWW-tSH-L-L-L-L-L-L-L History status: Exact match	10	2
100	HL_82191.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cHW-cWH-cHW-cWH-L-cWH-cWH-L-cHW-cWH-cWH-L History status: Exact match	16	2
101	HL_46510.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L History status: Exact match	8	2
102	HL_06867.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	2
103	HL_82120.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	7	2
104	HL_24668.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-L-L-L-L History status: Exact match	14	2
105	HL_67808.1 View exemplar Basepair signature: cWW-tSW-L History status: Exact match	5	2
106	HL_10252.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L-L History status: Exact match	12	2
107	HL_80229.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L-L History status: Exact match	12	2
108	HL_07597.1 View exemplar Basepair signature: cWW-L-tSH-L-L History status: Exact match	8	2
109	HL_48079.1 View exemplar Basepair signature: cWW-L-L-L History status: Exact match	5	2
110	HL_97209.1 View exemplar Basepair signature: cWW-R-R-R-cSH History status: Exact match	8	2
111	HL_96560.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	2
112	HL_06369.1 View exemplar Basepair signature: cWW-L-L-L-L-L History status: Exact match	8	2
113	HL_65315.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
114	HL_09982.1 View exemplar Basepair signature: cWW-L-L-L-tSS-L-L History status: Exact match	10	2
115	HL_38985.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
116	HL_88422.1 View exemplar Basepair signature: cWW-L History status: Exact match	3	2
117	HL_09763.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	2
118	HL_35965.1 View exemplar Basepair signature: cWW-R-R-tHW-R-R-R-R-R-R-R History status: Exact match	13	2
119	HL_76974.1 View exemplar Basepair signature: cWW-L-L History status: Exact match	4	2
120	HL_39395.1 View exemplar Basepair signature: cWW-cSH-R-R History status: Exact match	7	1
121	HL_29838.1 View exemplar Basepair signature: cWW-tHH-cSH-R-R History status: Exact match	8	1
122	HL_36947.1 View exemplar Basepair signature: cWW-cSS-L-L-L-L-cSS-L-L History status: Exact match	11	1
123	HL_25750.1 View exemplar Basepair signature: cWW-L-L-L-cWH-L-L History status: Exact match	9	1
124	HL_84485.1 View exemplar Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R History status: Exact match	18	1
125	HL_62599.1 View exemplar Basepair signature: cWW-L-L-L-L-L History status: Exact match	7	1
126	HL_11999.1 View exemplar Basepair signature: cWW-tHW-R-R-R-R-R-R-R-R-R-R History status: Exact match	13	1
127	HL_09353.1 View exemplar Basepair signature: cWW-L-L-L-L History status: Exact match	6	1
128	HL_81452.1 View exemplar Basepair signature: cWW-L-L-L-L-L History status: Exact match	7	1
129	HL_96975.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Exact match	7	1
130	HL_90954.1 View exemplar Basepair signature: cWW-tWH-tWH-L-L-L-L History status: Exact match	10	1
131	HL_79536.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
132	HL_60826.1 View exemplar Basepair signature: cWW-cWW-L-L-L-cSH History status: Exact match	9	1
133	HL_92519.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
134	HL_13575.1 View exemplar Basepair signature: cWW-R-R-R-R-tHW-R-R-R-R-R History status: Exact match	13	1
135	HL_11530.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L History status: Exact match	8	1
136	HL_42102.1 View exemplar Basepair signature: cWW-tSH-tHS-R-R History status: Exact match	7	1
137	HL_27858.1 View exemplar Basepair signature: cWW-tWH-cSH-L-L-L-L History status: Exact match	10	1
138	HL_76718.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
139	HL_13223.1 View exemplar Basepair signature: cWW-tWH-L-L-L-L History status: Exact match	8	1
140	HL_40430.1 View exemplar Basepair signature: cWW-cWW-R-cSH-R History status: Exact match	8	1
141	HL_48896.1 View exemplar Basepair signature: cWW-L-L-tHW-L-L-L-L History status: Exact match	10	1
142	HL_31164.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R History status: Exact match	14	1
143	HL_43084.1 View exemplar Basepair signature: cWW-L-L-cSS-cSS-L-L-L-L-L-L-L-L-L-L-L-L History status: Exact match	20	1
144	HL_38043.1 View exemplar Basepair signature: cWW-F-F-F-F-cWW-F-F History status: Exact match	10	1
145	HL_07219.1 View exemplar Basepair signature: cWW-L-L-L History status: Exact match	5	1
146	HL_39379.1 View exemplar Basepair signature: cWW-R-tSW-R-R History status: Exact match	8	1
147	HL_89821.1 View exemplar Basepair signature: cWW-cSH-L-L-L-L-L-L History status: Exact match	10	1
148	HL_68095.1 View exemplar Basepair signature: cWW-tSH-tHW-tHW-cSH-L History status: Exact match	11	1
149	HL_81097.1 View exemplar Basepair signature: cWW-cWW-R-cSW-R-cSH History status: Exact match	11	1
150	HL_48157.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
151	HL_96032.1 View exemplar Basepair signature: cWW-cSH-L-L-tSH-L-L-L-L-L-L-L History status: Exact match	15	1
152	HL_42288.1 View exemplar Basepair signature: cWW-R-R-cWS-cSH-R-R History status: Exact match	11	1
153	HL_88682.1 View exemplar Basepair signature: cWW-L-L History status: Exact match	4	1
154	HL_27626.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
155	HL_23847.1 View exemplar Basepair signature: cWW-R-R-R-cSS-R-cSW-R-R-R-R-R History status: Exact match	16	1
156	HL_69578.1 View exemplar Basepair signature: cWW-tWH-R-R-R-R History status: Exact match	8	1
157	HL_46046.1 View exemplar Basepair signature: cWW-cSH-L-L History status: Exact match	6	1
158	HL_66565.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-cSS-L-L History status: Exact match	13	1

Coloring options:
Nucleotide numbers

Exact match 158;

Hairpin Loop Motif Atlas Release 4.35 Download Csv Json

Hairpin Loop Motif Atlas Release 4.35

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