Internal Loop Motif Atlas Release 4.35

#	Motif	Num Nts	Instances
1	IL_75087.2 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match UU cWW (6) CA cWW (5) CC cWW (5) AA cWW (2) Self complementary (1) UC cWW (1) CA cWW with bulged A (1) Isolated cWH basepair (1) Isolated near basepair (1) UU cWW water inserted (1)	6	174
2	IL_14307.2 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged A (73) Major groove intercalation (3)	5	85
3	IL_38425.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged U (64)	5	68
4	IL_66544.1 View exemplar Basepair signature: cWW-cHW-cWW History status: Exact match Isolated cWH basepair (35) Other IL (1) UG cWW (1) UU cWW (1) cWH basepair with bulged bases (1)	6	61
5	IL_99086.1 View exemplar Basepair signature: cWW-L-R-L-R-cWW History status: Exact match Tandem non-canonical cWW pairs (30)	8	33
6	IL_55266.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Major groove platform (22) Major groove platform; stack outside cWW (1)	5	33
7	IL_66479.2 View exemplar Basepair signature: cWW-tSH-tHS-L-R-cWW History status: Exact match Triple sheared (28) AAA cross-strand stack (4)	10	32
8	IL_14771.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single stack bend (19) Single stack bend with bulge (1) Not an internal loop (1)	5	31
9	IL_47808.2 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged G (26)	5	30
10	IL_19174.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged C (28)	5	29
11	IL_37459.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Minor groove platform (22) Single bulged A (1) Multiple bulged bases (1)	5	28
12	IL_40183.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (22) tWS-tSW (1) Other IL (1)	8	25
13	IL_30217.1 View exemplar Basepair signature: cWW-tSH-L-cWW History status: Exact match Major groove platform; stack outside cWW (16)	6	22
14	IL_32847.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (11) Major groove outside cWW, minor groove, intercalation pocket (3) Basepair outside cWW (2) Intercalation pocket (1)	4	20
15	IL_84255.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (12)	4	18
16	IL_56317.2 View exemplar Basepair signature: cWW-cSW-cWW History status: Exact match Isolated cWS basepair (6) Isolated near basepair (4) Self complementary (2)	6	17
17	IL_51328.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (17)	8	17
18	IL_39733.2 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (12) Single bulged G, near cWW (1)	6	17
19	IL_07090.1 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN (13)	9	16
20	IL_80991.1 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: Exact match C-loop (14)	7	16
21	IL_35655.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-tHS-cWW History status: Exact match Kink-turn (14)	12	16
22	IL_38975.2 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Decoding loop related (9) Stack and bulge (2) Intercalated cWW (1)	5	15
23	IL_05859.2 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Isolated tHS basepair with bulges (11)	6	14
24	IL_11007.1 View exemplar Basepair signature: cWW-cSH-cWS-cWW History status: Exact match Major groove minor groove platform; mini C-loop (10) Major groove outside cWW, minor groove, intercalation pocket (1)	6	14
25	IL_62844.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tSS-L-R-R-cWW History status: Exact match Kink-turn (8) Kink-turn with non-sequential stacking (4)	12	13
26	IL_31288.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (12)	15	13
27	IL_51280.1 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: Exact match tSH-tHW-tHS (10)	10	12
28	IL_86320.1 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove platform with extra cWW (6)	7	11
29	IL_16568.2 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Major groove platform with intercalated tWH (3) Minor groove platform with intercalation (3) Minor groove platform (1)	5	11
30	IL_01979.2 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Major groove platform (3) Basepair outside cWW, intercalation pocket (3)	5	10
31	IL_73965.1 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Minor groove platform (8) Not an internal loop (1)	5	10
32	IL_73020.1 View exemplar Basepair signature: cWW-tSS-L-L-tHS-cWW History status: Exact match Kink-turn from U4 (5) Kink-turn (3) Kink-turn from T-box riboswitch (1)	10	9
33	IL_37943.1 View exemplar Basepair signature: cWW-L-L-L-cSH-L-cWW History status: Exact match SSU/LSU pseudoknot (6)	10	9
34	IL_71110.1 View exemplar Basepair signature: cWW-tSH-L-L-R-cWW History status: Exact match UAA/GAN related (5) UAA/GAN (2) UAA/GAN variation (2)	9	9
35	IL_66229.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match Major groove platform with extra pair (5) Other IL (1)	7	8
36	IL_05659.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (5)	6	8
37	IL_66117.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin; G-bulge (5)	13	8
38	IL_73152.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Minor groove platform with extra cWW (3)	7	8
39	IL_43986.1 View exemplar Basepair signature: cWW-L-tHH-cSH-tWH-tHS-R-cWW History status: Exact match Sarcin-Ricin target in LSU H95; G-bulge (4) 8x6 Sarcin-Ricin with inserted A; G-bulge (1) 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	7
40	IL_62742.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Major groove outside cWW, minor groove, intercalation pocket (3) Major groove minor groove platform; mini C-loop (1)	5	7
41	IL_33170.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: Exact match tSH-tHW (3) Other IL (1)	8	7
42	IL_79600.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Decoding loop with one bulged A (1) Decoding loop related (1)	6	7
43	IL_21168.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (2)	4	7
44	IL_04499.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match Minor groove platform (7)	6	7
45	IL_72160.1 View exemplar Basepair signature: cWW-cWW-L-R-cWW History status: Exact match Tandem non-canonical cWW pairs (2) Multiple bulged bases with near cWW (1) Other IL (1)	8	7
46	IL_26284.1 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match Minor groove platform related (2) Tandem non-canonical cWW pairs (2) Multiple bulged bases with non-canonical cWW (1) UAA/GAN variation (1)	9	7
47	IL_39642.2 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: Exact match tSH-tHW-tHS-cWW (4)	12	7
48	IL_09863.1 View exemplar Basepair signature: cWW-L-cWS-R-cWW History status: Exact match Decoding loop related (1)	8	7
49	IL_46824.1 View exemplar Basepair signature: cWW-cSH-L-cWS-tSW-R-R-cWW History status: Exact match Symmetric double minor groove platform (5)	10	6
50	IL_02944.1 View exemplar Basepair signature: cWW-L-tSH-tSH-tHS-cWW-R-cWW History status: Exact match Triple sheared with non-canonical cWW (3)	14	6
51	IL_17748.1 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove minor groove platform with extra cWW (2)	7	6
52	IL_33204.1 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: Exact match tSH-tSH-tHH-tHS (2)	12	6
53	IL_38443.1 View exemplar Basepair signature: cWW-L-L-tWH-L-R-R-cWW History status: Exact match tHW-tHW cross-strand stack (4)	11	6
54	IL_64594.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (3)	4	6
55	IL_94365.2 View exemplar Basepair signature: cWW-tSH-tHW-L-L-L-tWH-tHS-R-R-R-cWW History status: Exact match Bacterial 5S Loop E (6)	18	6
56	IL_62139.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Minor groove platform with extra cWW (2)	7	6
57	IL_59079.1 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: Exact match	10	6
58	IL_12121.2 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (5)	8	5
59	IL_25141.1 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: Exact match	9	5
60	IL_10078.2 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match Pseudoknot (3)	9	5
61	IL_91974.1 View exemplar Basepair signature: cWW-tWW-cWW History status: Exact match Isolated tWW turn (3)	6	5
62	IL_31716.1 View exemplar Basepair signature: cWW-L-R-L-L-L-cWW History status: Exact match Intercalated tWH (3)	9	5
63	IL_06598.1 View exemplar Basepair signature: cWW-L-L-tWW-cSH-R-cWW History status: Exact match	11	5
64	IL_78844.1 View exemplar Basepair signature: cWW-L-L-L-R-cWW History status: Exact match Major groove minor groove platform with extra cWW (2) Isolated basepair with bulged bases (1)	8	5
65	IL_99308.1 View exemplar Basepair signature: cWW-tSH-tHH-tWW-tSS-tHH-cSS-cWW History status: Exact match Kink-turn related (2)	13	5
66	IL_78108.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHS-L-cWW History status: Exact match tSH-tHS-tHW (1)	13	5
67	IL_19913.1 View exemplar Basepair signature: cWW-L-L-L-L-R-R-R-R-cWW History status: Exact match Tandem non-canonical cWW pairs with near WC pairs (1) Other IL (1)	12	5
68	IL_76757.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Major groove outside cWW, minor groove, intercalation pocket (2)	4	5
69	IL_51199.1 View exemplar Basepair signature: cWW-tWH-L-L-cWW History status: Exact match C-loop (5)	7	5
70	IL_57903.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWW History status: Exact match	11	5
71	IL_09801.1 View exemplar Basepair signature: cWW-tSH-L-tHS-cWW History status: Exact match UAA/GAN related (1) UAA/GAN (1) UAA/GAN variation (1)	9	5
72	IL_40028.2 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	5
73	IL_19888.1 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN with extra cWW (2)	11	5
74	IL_60822.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Stack outside cWW (2) Major groove intercalation (2) Major groove platform outside cWW (1)	5	5
75	IL_63597.2 View exemplar Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW History status: Exact match	12	5
76	IL_09221.1 View exemplar Basepair signature: cWW-tSS-cWW-tSH-cWS-L-tWH-tSH-L-L-tSS-L-cWW History status: Exact match	16	5
77	IL_03475.1 View exemplar Basepair signature: cWW-L-tWH-tHS-R-cWW History status: Exact match 5x5 Sarcin-Ricin with intercalated A; G-bulge (2) tSH-tHW-tHS (2)	10	5
78	IL_44016.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Minor groove platform (4)	5	5
79	IL_16268.1 View exemplar Basepair signature: cWW-cWW-L-cWW History status: Exact match Major groove platform with extra pair (3)	7	5
80	IL_24191.2 View exemplar Basepair signature: cWW-cWW-cWW-L-R-cWW History status: Exact match Other IL (1)	10	5
81	IL_07895.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match 180 degree turn (1)	5	5
82	IL_58422.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	4
83	IL_84249.1 View exemplar Basepair signature: cWW-cWW-L-cSH-tWH-tHS-R-R-cWW History status: Exact match 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)	14	4
84	IL_26073.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW History status: Exact match Kink-turn (2)	12	4
85	IL_56837.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match	6	4
86	IL_91585.1 View exemplar Basepair signature: cWW-L-L-cWS-cWW History status: Exact match Minor groove platform (4)	7	4
87	IL_52085.1 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: Exact match Non canonical cWW and near pair (1)	8	4
88	IL_18005.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Isolated cWS basepair (2)	6	4
89	IL_75157.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (2)	4	4
90	IL_42020.1 View exemplar Basepair signature: cWW-cWW-cSH-L-cWW History status: Exact match Other IL (1)	8	4
91	IL_39617.1 View exemplar Basepair signature: cWW-tWH-R-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (4)	9	4
92	IL_12670.1 View exemplar Basepair signature: cWW-L-L-tSH-tHS-L-L-R-cWW History status: Exact match Kink-turn (3)	13	4
93	IL_60036.2 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match Left turn (2)	7	4
94	IL_33024.1 View exemplar Basepair signature: cWW-L-L-L-R-cWW History status: Exact match	8	4
95	IL_82039.1 View exemplar Basepair signature: cWW-L-L-tHS-cWW History status: Exact match	8	4
96	IL_07899.1 View exemplar Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW History status: Exact match	18	4
97	IL_94577.1 View exemplar Basepair signature: cWW-tSH-tHS-L-L-R-R-cWW History status: Exact match	12	4
98	IL_80558.2 View exemplar Basepair signature: cWW-tSH-L-tHS-tHS-R-cWW History status: Exact match Quadruple sheared (3)	12	4
99	IL_88654.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match Decoding loop related (1)	7	4
100	IL_32362.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Minor groove platform with intercalation (1)	4	4
101	IL_82865.1 View exemplar Basepair signature: cWW-L-R-L-R-cWW History status: Exact match Self complementary (1) Tandem non-canonical cWW pairs (1)	8	3
102	IL_60003.1 View exemplar Basepair signature: cWW-L-L-L-L-R-R-cWW History status: Exact match	10	3
103	IL_64942.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)	14	3
104	IL_76373.2 View exemplar Basepair signature: cWW-cWW-L-tSH-tHH-cSH-tWH-tHS-R-cWW History status: Exact match 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2) 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	17	3
105	IL_25353.2 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: Exact match	8	3
106	IL_43649.1 View exemplar Basepair signature: cWW-tHH-L-cWS-R-cWW History status: Exact match Major groove minor groove platform with tHH (2) C-loop (1)	8	3
107	IL_48361.2 View exemplar Basepair signature: cWW-cWW-tSS-tHS-tSS-L-L-L-tWH-tWH-L-L-L-tSS-tHS-cWW History status: Exact match	18	3
108	IL_17091.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match	7	3
109	IL_66257.1 View exemplar Basepair signature: cWW-tSH-L-L-R-R-cWW History status: Exact match UAA/GAN with extra pair (1)	10	3
110	IL_51841.1 View exemplar Basepair signature: cWW-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (3)	8	3
111	IL_21387.1 View exemplar Basepair signature: cWW-L-L-cSS-R-cWW History status: Exact match	7	3
112	IL_77584.1 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: Exact match cWH basepair and non-canonical AC (3)	8	3
113	IL_61827.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-tSW-L-L-R-cWW History status: Exact match	13	3
114	IL_51283.1 View exemplar Basepair signature: cWW-L-cWS-cWW History status: Exact match	7	3
115	IL_76349.1 View exemplar Basepair signature: cWW-L-L-R-R-cWW History status: Exact match	8	3
116	IL_52203.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: Exact match tSH-tHW-tWH-tHS (3)	12	3
117	IL_87777.1 View exemplar Basepair signature: cWW-L-cSH-R-cWW History status: Exact match	8	3
118	IL_34701.1 View exemplar Basepair signature: cWW-L-tHS-cWW History status: Exact match	7	2
119	IL_13587.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW-cWW History status: Exact match	10	2
120	IL_30645.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Triple sheared related (1)	11	2
121	IL_82836.1 View exemplar Basepair signature: cWW-cWW-tWW-tSH-tHH-L-L-L-L-L-L-L-L-L-tWW-R-cWW History status: Exact match	20	2
122	IL_44894.1 View exemplar Basepair signature: cWW-cHW-L-cHW-L-cHW-cHW-L-R-cWW History status: Exact match	14	2
123	IL_36021.1 View exemplar Basepair signature: cWW-cWS-cWW History status: Exact match Minor groove platform (1) Major groove outside cWW, minor groove, intercalation pocket (1)	5	2
124	IL_45887.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	2
125	IL_36703.1 View exemplar Basepair signature: cWW-tWW-cWW-tSH-tHH-L-L-cSH-L-L-L-L-L-L-tWW-R-R-cWW History status: Exact match	22	2
126	IL_96579.2 View exemplar Basepair signature: cWW-cWW-L-L-L-tWH-L-L-L-L-cWW History status: Exact match	13	2
127	IL_23144.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Intercalated cWS (1) Other IL (1)	5	2
128	IL_17140.1 View exemplar Basepair signature: cWW-L-tHW-R-cWW History status: Exact match	8	2
129	IL_00183.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	2
130	IL_93061.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (2)	14	2
131	IL_81553.1 View exemplar Basepair signature: cWW-cSH-L-L-R-cWW History status: Exact match	8	2
132	IL_21759.1 View exemplar Basepair signature: cWW-L-L-cSH-cWW History status: Exact match	7	2
133	IL_89063.1 View exemplar Basepair signature: cWW-cWW-tWH-L-L-L-cSH-cWW History status: Exact match	11	2
134	IL_08583.1 View exemplar Basepair signature: cWW-cWW-L-cWW History status: Exact match	7	2
135	IL_20637.1 View exemplar Basepair signature: cWW-tWH-tWH-cSH-L-cWS-cWW History status: Exact match C-loop with extra cWW pair (1)	9	2
136	IL_89695.1 View exemplar Basepair signature: cWW-tWH-tWH-L-L-tWW-R-R-cWW History status: Exact match	13	2
137	IL_60222.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	2
138	IL_31668.1 View exemplar Basepair signature: cWW-cWH-tSH-tWH-tSS-tHW-L-cWH-cWW History status: Exact match	14	2
139	IL_17861.1 View exemplar Basepair signature: cWW-L-L-L-L-tHS-cWW-R-cWW History status: Exact match	13	2
140	IL_98320.1 View exemplar Basepair signature: cWW-tSH-L-L-L-cWW-R-R-R-cWW History status: Exact match	14	2
141	IL_37153.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	2
142	IL_35488.1 View exemplar Basepair signature: cWW-cWW-tWW-cWW History status: Exact match Tandem non-canonical cWW pairs (1) tWW and non-canonical cWW (1)	8	2
143	IL_30491.1 View exemplar Basepair signature: cWW-tWW-cSH-tWH-tHS-cWW History status: Exact match 6x5 Sarcin-Ricin; G-bulge (2)	11	2
144	IL_37174.2 View exemplar Basepair signature: cWW-L-L-cWW-R-R-cWW History status: Exact match	10	2
145	IL_91705.1 View exemplar Basepair signature: cWW-L-R-L-cWW-cWW-cWW History status: Exact match	11	2
146	IL_18207.1 View exemplar Basepair signature: cWW-tSW-L-R-R-R-cWW History status: Exact match	11	2
147	IL_94279.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW-cWW-cSH-R-R-cSW History status: Exact match	13	2
148	IL_48934.1 View exemplar Basepair signature: cWW-cWW-tSH-tWH-tHW-L-cWW-R-cWW History status: Exact match tSH-tHW-tHS with extra cWW pairs (1)	14	2
149	IL_00477.2 View exemplar Basepair signature: cWW-tWH-L-tHS-L-R-R-cWW History status: Exact match	12	2
150	IL_40423.1 View exemplar Basepair signature: cWW-L-L-L-L-L-cWW-R-R-cWW History status: Exact match	14	2
151	IL_73617.1 View exemplar Basepair signature: cWW-cWW-L-tHS-cWW-R-cWW History status: Exact match	12	2
152	IL_17264.1 View exemplar Basepair signature: cWW-L-L-L-R-cWW History status: Exact match	9	2
153	IL_18466.1 View exemplar Basepair signature: cWW-L-tSH-tSH-tHS-R-cWW History status: Exact match	12	2
154	IL_23792.1 View exemplar Basepair signature: cWW-cSH-L-cWS-cWW History status: Exact match Major groove minor groove platform with intercalation; mini C-loop (2)	7	2
155	IL_95438.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW-cWW History status: Exact match tSH-tHW-tHH-tHS (1) 9x8 Sarcin-Ricin; G-bulge (1)	17	2
156	IL_30341.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match	6	2
157	IL_82730.1 View exemplar Basepair signature: cWW-L-tHS-cWW History status: Exact match	7	2
158	IL_61350.1 View exemplar Basepair signature: cWW-cWW-L-L-L-cSH-cWW History status: Exact match	10	2
159	IL_72759.1 View exemplar Basepair signature: cWW-tSH-tSH-tSS-tHS-L-R-cWW History status: Exact match Kink-turn (1)	12	2
160	IL_12700.1 View exemplar Basepair signature: cWW-L-L-L-cWW-cWW History status: Exact match Other IL (1)	9	2
161	IL_26237.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Other IL (1)	5	2
162	IL_96889.1 View exemplar Basepair signature: cWW-L-L-R-cWW History status: Exact match	7	1
163	IL_95289.1 View exemplar Basepair signature: cWW-L-L-tHS-R-cWW History status: Exact match	9	1
164	IL_06260.1 View exemplar Basepair signature: cWW-tSW-L-L-L-L-L-L-L-L-tSW-L-L-L-L-L-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	28	1
165	IL_89927.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-R-R-R-R-cWW History status: Exact match	16	1
166	IL_11095.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-L-L-L-L-L-L-L-L-R-R-R-R-cWW History status: Exact match	22	1
167	IL_59693.1 View exemplar Basepair signature: cWW-tWW-L-L-L-L-L-L-L-L-L-tWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	24	1
168	IL_89834.1 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match	9	1
169	IL_39619.1 View exemplar Basepair signature: cWW-L-tHW-tHW-L-L-R-R-R-cWW History status: Exact match	14	1
170	IL_41198.1 View exemplar Basepair signature: cWW-tSH-tHS-tWS-cWW History status: Exact match tSH-tHS-tWS (1)	10	1
171	IL_91561.1 View exemplar Basepair signature: cWW-L-L-L-cSS-L-cWW-R-R-cWW History status: Exact match	13	1
172	IL_50285.1 View exemplar Basepair signature: cWW-L-L-L-cWW-L-bif-cWW History status: Exact match Vitamin B12 Aptamer (1)	11	1
173	IL_83846.1 View exemplar Basepair signature: cWW-cSS-tSS-L-L-tHH-tHS-tSS-L-R-cWW History status: Exact match	13	1
174	IL_37407.1 View exemplar Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW History status: Exact match	14	1
175	IL_00638.1 View exemplar Basepair signature: cWW-L-tSH-L-cSS-tSS-tWW-R-cWW History status: Exact match	11	1
176	IL_61145.1 View exemplar Basepair signature: cWW-cSH-L-tWH-cSH-cWH-cHW-cWW-cSH-R-cWW History status: Exact match	15	1
177	IL_10984.1 View exemplar Basepair signature: cWW-tHW-L-R-L-R-L-R-L-L-L-R-L-cWW History status: Exact match Pseudoknot (1)	17	1
178	IL_52294.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: Exact match	10	1
179	IL_92407.1 View exemplar Basepair signature: cWW-cWW-cHW-L-L-L-L-L-L-L-L-cWW History status: Exact match	14	1
180	IL_73945.1 View exemplar Basepair signature: cWW-cWW-L-R-tHS-cWW History status: Exact match	10	1
181	IL_24540.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: Exact match	8	1
182	IL_02258.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match	7	1
183	IL_51027.1 View exemplar Basepair signature: cWW-L-L-L-tSH-L-cWW-cWW-R-R-R-cWW History status: Exact match Kink-turn (1)	17	1
184	IL_04387.1 View exemplar Basepair signature: cWW-L-L-L-R-cWW History status: Exact match	8	1
185	IL_43139.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: Exact match	14	1
186	IL_10068.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: Exact match	10	1
187	IL_33256.1 View exemplar Basepair signature: cWW-tHW-L-L-L-L-R-cSH-R-cWW History status: Exact match	12	1
188	IL_64834.1 View exemplar Basepair signature: cWW-L-L-L-R-R-R-cWW History status: Exact match	10	1
189	IL_06395.1 View exemplar Basepair signature: cWW-L-L-L-tHH-tHS-cWW History status: Exact match Reverse kink-turn (1)	11	1
190	IL_35646.1 View exemplar Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW History status: Exact match	11	1
191	IL_78395.1 View exemplar Basepair signature: cWW-tSH-L-L-R-cWW History status: Exact match	9	1
192	IL_49661.1 View exemplar Basepair signature: cWW-tSH-tHH-L-tHS-cWW History status: Exact match	11	1
193	IL_53567.1 View exemplar Basepair signature: cWW-cWW-cSS-cWW-cWW-cWW-cWW-tSS-cWW-L-L-L-L-L-L-L-cWW-cSS-L-L-cWW-R-R-cWW History status: Exact match	26	1
194	IL_63567.1 View exemplar Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW History status: Exact match Kink-turn related (1)	11	1
195	IL_28759.1 View exemplar Basepair signature: cWW-L-L-L-L-L-R-R-cWW History status: Exact match	11	1
196	IL_72664.1 View exemplar Basepair signature: cWW-cSH-L-cWW History status: Exact match Minor groove platform (1)	6	1
197	IL_28731.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Stack outside cWW (1)	5	1
198	IL_15639.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW History status: Exact match	11	1
199	IL_24732.1 View exemplar Basepair signature: cWW-tWW-L-tWW-L-cWW History status: Exact match	10	1
200	IL_80033.1 View exemplar Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (1)	12	1
201	IL_38933.1 View exemplar Basepair signature: cWW-cWW-L-L-L-tSS-L-L-tSH-tHS-R-cWW History status: Exact match	15	1
202	IL_30962.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: Exact match	13	1
203	IL_14943.1 View exemplar Basepair signature: cWW-tWH-L-L-L-cWW History status: Exact match Major groove platform; stack outside cWW (1)	8	1
204	IL_95486.1 View exemplar Basepair signature: cWW-cWW-tHH-cWW History status: Exact match	8	1
205	IL_79739.1 View exemplar Basepair signature: cWW-R-cSW-R-R-tHS-cWW History status: Exact match	11	1
206	IL_63725.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: Exact match	14	1
207	IL_07665.1 View exemplar Basepair signature: cWW-cWW-tSS-L-L-L-tHH-L-L-L-L-L-L-L-L-L-L-L-cWW-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-L-R-R-cWW History status: Exact match	45	1
208	IL_06888.1 View exemplar Basepair signature: cWW-cWW-cWW-tSH-tHH-L-L-L-L-L-L-L-L-L-cWW-R-R-R-R-R-R-cWW History status: Exact match	25	1
209	IL_37181.1 View exemplar Basepair signature: cWW-tSH-L-cWW History status: Exact match	7	1
210	IL_20863.1 View exemplar Basepair signature: cWW-cWW-L-L-R-R-cWW History status: Exact match	10	1
211	IL_78655.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHW-L-R-R-R-R-R-cWW History status: Exact match	17	1
212	IL_92732.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-L-L-L-L-L-L-L-R-R-R-R-R-R-cWW History status: Exact match	23	1
213	IL_93290.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW History status: Exact match	14	1
214	IL_19944.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match	7	1
215	IL_43925.1 View exemplar Basepair signature: cWW-L-L-L-L-cSW-cWW-cSH-R-R-cWW History status: Exact match	14	1
216	IL_20512.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-R-R-R-R-R-cWW History status: Exact match	15	1
217	IL_06791.1 View exemplar Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW History status: Exact match	23	1
218	IL_07512.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (1)	8	1
219	IL_01235.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-R-R-R-R-R-cWW History status: Exact match	15	1
220	IL_95564.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHS-cWW History status: Exact match	11	1
221	IL_72042.1 View exemplar Basepair signature: cWW-tSH-tSH-cSH-cWW History status: Exact match	8	1
222	IL_71836.1 View exemplar Basepair signature: cWW-tHW-tHS-cWW-cWW History status: Exact match	10	1
223	IL_20414.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-tSS-cWW History status: Exact match	12	1
224	IL_78328.1 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match	9	1
225	IL_02696.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	13	1
226	IL_24876.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: Exact match	10	1
227	IL_98681.1 View exemplar Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW History status: Exact match	21	1
228	IL_09665.1 View exemplar Basepair signature: cWW-tWH-cSW-L-L-tHS-R-R-cWW History status: Exact match	13	1
229	IL_29291.1 View exemplar Basepair signature: cWW-cSS-L-L-tSH-tSS-L-R-cWW History status: Exact match Kink-turn (1)	11	1
230	IL_53725.1 View exemplar Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW History status: Exact match	15	1
231	IL_59244.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: Exact match	10	1
232	IL_19656.1 View exemplar Basepair signature: cWW-cSH-cWS-cWW-cWW History status: Exact match	9	1
233	IL_28732.1 View exemplar Basepair signature: cWW-L-L-L-L-R-R-R-cWW History status: Exact match	11	1
234	IL_73246.1 View exemplar Basepair signature: cWW-cWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	13	1
235	IL_13568.1 View exemplar Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with bulged A; G-bulge (1)	13	1
236	IL_57464.1 View exemplar Basepair signature: cWW-tWH-tHH-tHS-cWW History status: Exact match	10	1
237	IL_92029.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: Exact match	7	1
238	IL_29564.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: Exact match	10	1
239	IL_20373.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	1
240	IL_14530.1 View exemplar Basepair signature: cWW-L-tWH-tWH-L-L-R-R-cWW History status: Exact match	13	1
241	IL_24130.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-R-R-R-cWW History status: Exact match	14	1
242	IL_46719.1 View exemplar Basepair signature: cWW-cWW-cSH-tSH-tHW-tHH-cWH-L-L-L-L-R-cSH-cWW History status: Exact match 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	18	1
243	IL_20611.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW History status: Exact match	18	1
244	IL_12243.1 View exemplar Basepair signature: cWW-tSH-L-L-L-L-L-cWW-R-R-cWW History status: Exact match	15	1
245	IL_90173.1 View exemplar Basepair signature: cWW-L-tSW-tHH-cSH-tWH-tHS-R-cWW History status: Exact match	15	1
246	IL_54870.1 View exemplar Basepair signature: cWW-L-L-L-R-L-cWW History status: Exact match	9	1
247	IL_24269.1 View exemplar Basepair signature: cWW-tWW-tWW-tSS-L-cWW History status: Exact match Kink-turn related (1)	11	1
248	IL_37918.1 View exemplar Basepair signature: cWW-tSH-tHW-tWW-cWW History status: Exact match tSH-tHW-tWW (1)	10	1
249	IL_50384.1 View exemplar Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW History status: Exact match	11	1
250	IL_28619.1 View exemplar Basepair signature: cWW-L-L-L-R-R-cWW History status: Exact match	9	1
251	IL_97309.1 View exemplar Basepair signature: cWW-L-L-L-L-R-cWW History status: Exact match	9	1
252	IL_20315.1 View exemplar Basepair signature: cWW-L-L-L-L-R-cWW History status: Exact match	9	1
253	IL_93484.1 View exemplar Basepair signature: cWW-cWS-L-L-cWW History status: Exact match	8	1
254	IL_96016.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHS-cWW History status: Exact match	11	1
255	IL_29650.1 View exemplar Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW History status: Exact match	12	1
256	IL_36879.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tSS-tHW-tHS-cWW-cWW History status: Exact match Kink-turn (1)	14	1
257	IL_41282.1 View exemplar Basepair signature: cWW-cWW-L-tWW-L-L-R-R-cWW History status: Exact match	13	1
258	IL_97816.1 View exemplar Basepair signature: cWW-cWW-tWW-L-L-L-L-L-L-L-L-L-L-L-L-R-R-cWW History status: Exact match	20	1
259	IL_70393.1 View exemplar Basepair signature: cWW-tHH-L-L-L-L-R-R-R-R-cWW History status: Exact match	14	1

Coloring options:
Nucleotide numbers

Exact match 259;

Internal Loop Motif Atlas Release 4.35 Download Csv Json

Internal Loop Motif Atlas Release 4.35

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