Equivalence class NR_4.0_78247.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5Z1I|1|A (rep) | RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin | X-ray diffraction | 1.9 | 2018-05-30 | ||
| 2 | 5XZ1|1|C+ 5XZ1|1|D | RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 | X-ray diffraction | 3.01 | 2018-07-18 | ||
| 3 | 5XZ1|1|A+ 5XZ1|1|B | RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 | X-ray diffraction | 3.01 | 2018-07-18 | ||
| 4 | 5Z1H|1|B+ 5Z1H|1|A | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin | X-ray diffraction | 2.4 | 2018-05-30 | ||
| 5 | 5ZEI|1|A+ 5ZEI|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin | X-ray diffraction | 2.1 | 2018-03-21 | ||
| 6 | 5ZEG|1|A+ 5ZEG|1|B+ 5ZEG|1|C | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-ray diffraction | 2.4 | 2018-03-21 | ||
| 7 | 5ZEM|1|A+ 5ZEM|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin | X-ray diffraction | 3.1 | 2018-03-21 | ||
| 8 | 5ZEJ|1|A+ 5ZEJ|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin | X-ray diffraction | 3.5 | 2018-03-21 |
Release history
| Release | 9.15 |
|---|---|
| Date | 2018-11-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_78247.1 | NR_4.0_25744.1 | 9.15 | (3) 5ZEJ|1|A+5ZEJ|1|B, 5ZEI|1|A+5ZEI|1|B, 5ZEM|1|A+5ZEM|1|B | (5) 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5XZ1|1|C+5XZ1|1|D, 5XZ1|1|A+5XZ1|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | (0) |
| NR_4.0_78247.1 | NR_4.0_47577.1 | 9.15 | (1) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | (7) 5ZEM|1|A+5ZEM|1|B, 5ZEJ|1|A+5ZEJ|1|B, 5ZEI|1|A+5ZEI|1|B, 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5XZ1|1|C+5XZ1|1|D, 5XZ1|1|A+5XZ1|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_78247.1 | NR_4.0_21918.1 | 9.16 | (1) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | (7) 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5ZEM|1|A+5ZEM|1|B, 5XZ1|1|C+5XZ1|1|D, 5ZEJ|1|A+5ZEJ|1|B, 5XZ1|1|A+5XZ1|1|B, 5ZEI|1|A+5ZEI|1|B | (0) |
| NR_4.0_78247.1 | NR_4.0_51110.3 | 9.16 | (7) 5ZEI|1|A+5ZEI|1|B, 5XZ1|1|C+5XZ1|1|D, 5Z1H|1|B+5Z1H|1|A, 5XZ1|1|A+5XZ1|1|B, 5Z1I|1|A, 5ZEJ|1|A+5ZEJ|1|B, 5ZEM|1|A+5ZEM|1|B | (1) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | (25) 4F8U|1|A+4F8U|1|B, 4P3S|1|B+4P3S|1|A, 4GPY|1|A+4GPY|1|B, 1MWL|1|A+1MWL|1|B, 4PDQ|1|A+4PDQ|1|B, 2ESI|1|A+2ESI|1|B, 2ET5|1|A+2ET5|1|B, 3TD1|1|B+3TD1|1|A, 4GPW|1|A+4GPW|1|B, 1J7T|1|A+1J7T|1|B, 4P20|1|A+4P20|1|B, 2BE0|1|A+2BE0|1|B, 1LC4|1|A+1LC4|1|B, 2ET3|1|A+2ET3|1|B, 2BEE|1|A+2BEE|1|B, 2PWT|1|A+2PWT|1|B, 2ET4|1|A+2ET4|1|B, 3S4P|1|A+3S4P|1|B, 4F8V|1|A+4F8V|1|B, 4K32|1|A+4K32|1|B, 1YRJ|1|A+1YRJ|1|B, 2ESJ|1|A+2ESJ|1|B, 2F4T|1|B+2F4T|1|A, 3WRU|1|A+3WRU|1|B, 4GPX|1|A+4GPX|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | Title: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-RAY DIFFRACTION | 2.4 | 22 | ||
| 2 | 5XZ1|1|C+5XZ1|1|D | Title: Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 | X-RAY DIFFRACTION | 3.01 | 22 | ||
| 3 | 5Z1H|1|B+5Z1H|1|A | Title: Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin | X-RAY DIFFRACTION | 2.4 | 23 | ||
| 4 | 5XZ1|1|A+5XZ1|1|B | Title: Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 | X-RAY DIFFRACTION | 3.01 | 22 | ||
| 5 | 5Z1I|1|A | Title: Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin | X-RAY DIFFRACTION | 1.9 | 21 | ||
| 6 | 5ZEM|1|A+5ZEM|1|B | Title: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin | X-RAY DIFFRACTION | 3.1 | 21 | ||
| 7 | 5ZEJ|1|A+5ZEJ|1|B | Title: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin | X-RAY DIFFRACTION | 3.5 | 21 | ||
| 8 | 5ZEI|1|A+5ZEI|1|B | Title: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin | X-RAY DIFFRACTION | 2.1 | 21 |
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