Equivalence class NR_4.0_25744.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5ZEI|1|A+ 5ZEI|1|B (rep) | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin | X-ray diffraction | 2.1 | 2018-03-21 | ||
| 2 | 5ZEM|1|A+ 5ZEM|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin | X-ray diffraction | 3.1 | 2018-03-21 | ||
| 3 | 5ZEJ|1|A+ 5ZEJ|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin | X-ray diffraction | 3.5 | 2018-03-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_25744.1 | NR_4.0_78247.1 | 9.15 | (3) 5ZEJ|1|A+5ZEJ|1|B, 5ZEI|1|A+5ZEI|1|B, 5ZEM|1|A+5ZEM|1|B | (0) | (5) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5XZ1|1|C+5XZ1|1|D, 5XZ1|1|A+5XZ1|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5ZEM|1|A+5ZEM|1|B | Title: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin | X-RAY DIFFRACTION | 3.1 | 21 | ||
| 2 | 5ZEJ|1|A+5ZEJ|1|B | Title: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin | X-RAY DIFFRACTION | 3.5 | 21 | ||
| 3 | 5ZEI|1|A+5ZEI|1|B | Title: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin | X-RAY DIFFRACTION | 2.1 | 21 |
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