#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15Z1I|1|A (rep)RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructSyntheticCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicinX-ray diffraction1.92018-05-30
22PWT|1|A+ 2PWT|1|B22-mer of the ribosomal decoding siteCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-ray diffraction1.82007-09-18
33TD1|1|B+ 3TD1|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-ray diffraction2.12011-12-07
44K32|1|A+ 4K32|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')LeishmaniaEukaryaCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-ray diffraction2.52013-07-31
55ZEI|1|A+ 5ZEI|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructSyntheticCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.12018-03-21
65XZ1|1|C+ 5XZ1|1|DRNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructSyntheticCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-ray diffraction3.012018-07-18
75XZ1|1|A+ 5XZ1|1|BRNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructSyntheticCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-ray diffraction3.012018-07-18
84P3S|1|B+ 4P3S|1|A5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructSyntheticCrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.32016-05-04
92ET5|1|A+ 2ET5|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Ribostamycin and the 16S-RRNA A-SiteX-ray diffraction2.22005-12-13
104PDQ|1|A+ 4PDQ|1|BRNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3')synthetic constructSyntheticCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-ray diffraction32015-01-07
114GPY|1|A+ 4GPY|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinX-ray diffraction2.82013-04-03
124GPW|1|A+ 4GPW|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)X-ray diffraction32013-04-03
131MWL|1|A+ 1MWL|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-ray diffraction2.42003-02-18
142ET4|1|A+ 2ET4|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Neomycin B and the 16S-RRNA A-SiteX-ray diffraction2.42005-12-13
154GPX|1|A+ 4GPX|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)X-ray diffraction2.62013-04-03
165Z1H|1|B+ 5Z1H|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructSyntheticCrystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicinX-ray diffraction2.42018-05-30
172ESJ|1|A+ 2ESJ|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Lividomycin A and the 16S-Rrna A SiteX-ray diffraction2.22005-12-20
182ESI|1|A+ 2ESI|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Kanamycin A and the 16S-Rrna A Site.X-ray diffraction32005-12-20
194F8V|1|A+ 4F8V|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-ray diffraction2.82012-08-15
203WRU|1|A+ 3WRU|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-ray diffraction2.32014-11-05
214F8U|1|A+ 4F8U|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-ray diffraction22012-08-15
223S4P|1|A+ 3S4P|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-ray diffraction2.562011-09-21
234P20|1|A+ 4P20|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructSyntheticCrystal structures of the bacterial ribosomal decoding site complexed with amikacinX-ray diffraction2.72014-05-07
241LC4|1|A+ 1LC4|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A SiteX-ray diffraction2.542003-04-08
252ET3|1|A+ 2ET3|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Gentamicin C1A and the 16S-RRNA A-SiteX-ray diffraction2.82005-12-13
265ZEJ|1|A+ 5ZEJ|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructSyntheticCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-ray diffraction3.52018-03-21
275ZEM|1|A+ 5ZEM|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructSyntheticCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-ray diffraction3.12018-03-21
282BE0|1|A+ 2BE0|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.X-ray diffraction2.632005-12-20
292BEE|1|A+ 2BEE|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Paromomycin derivative JS4 and the 16S-Rrna A SiteX-ray diffraction2.62005-12-20
301J7T|1|A+ 1J7T|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-ray diffraction2.52002-05-18
311YRJ|1|A+ 1YRJ|1|BBacterial 16 S Ribosomal RNA A Site OligonucleotideCrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideX-ray diffraction2.72005-06-07
322F4T|1|B+ 2F4T|1|A5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Asite RNA + designer antibioticX-ray diffraction32006-05-02

Release history

Release9.169.179.189.199.209.219.229.239.24
Date2018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_51110.3NR_4.0_51110.29.16(25) 2BEE|1|A+2BEE|1|B, 4GPY|1|A+4GPY|1|B, 2PWT|1|A+2PWT|1|B, 2BE0|1|A+2BE0|1|B, 4GPX|1|A+4GPX|1|B, 2F4T|1|B+2F4T|1|A, 1YRJ|1|A+1YRJ|1|B, 4P20|1|A+4P20|1|B, 3TD1|1|B+3TD1|1|A, 2ESI|1|A+2ESI|1|B, 4K32|1|A+4K32|1|B, 3S4P|1|A+3S4P|1|B, 4PDQ|1|A+4PDQ|1|B, 4F8U|1|A+4F8U|1|B, 2ET3|1|A+2ET3|1|B, 4P3S|1|B+4P3S|1|A, 1LC4|1|A+1LC4|1|B, 3WRU|1|A+3WRU|1|B, 2ESJ|1|A+2ESJ|1|B, 1J7T|1|A+1J7T|1|B, 4GPW|1|A+4GPW|1|B, 2ET5|1|A+2ET5|1|B, 4F8V|1|A+4F8V|1|B, 2ET4|1|A+2ET4|1|B, 1MWL|1|A+1MWL|1|B(7) 5ZEI|1|A+5ZEI|1|B, 5XZ1|1|A+5XZ1|1|B, 5Z1H|1|B+5Z1H|1|A, 5Z1I|1|A, 5ZEJ|1|A+5ZEJ|1|B, 5XZ1|1|C+5XZ1|1|D, 5ZEM|1|A+5ZEM|1|B(10) 4WCP|1|A+4WCP|1|B+4WCP|1|C, 2G5Q|1|A+2G5Q|1|B, 4WCR|1|A+4WCR|1|B, 5BXK|1|A+5BXK|1|B, 5BWS|1|A+5BWS|1|B, 5BXK|1|C+5BXK|1|D, 5BWS|1|C+5BWS|1|D, 3BNL|1|A+3BNL|1|B, 4WCS|1|A+4WCS|1|B, 4WCQ|1|A+4WCQ|1|B
NR_4.0_51110.3NR_4.0_78247.19.16(7) 5ZEI|1|A+5ZEI|1|B, 5Z1I|1|A, 5XZ1|1|A+5XZ1|1|B, 5ZEM|1|A+5ZEM|1|B, 5XZ1|1|C+5XZ1|1|D, 5Z1H|1|B+5Z1H|1|A, 5ZEJ|1|A+5ZEJ|1|B(25) 4P20|1|A+4P20|1|B, 1LC4|1|A+1LC4|1|B, 2PWT|1|A+2PWT|1|B, 2BE0|1|A+2BE0|1|B, 4GPX|1|A+4GPX|1|B, 1YRJ|1|A+1YRJ|1|B, 2ESI|1|A+2ESI|1|B, 2ET5|1|A+2ET5|1|B, 4K32|1|A+4K32|1|B, 3S4P|1|A+3S4P|1|B, 4PDQ|1|A+4PDQ|1|B, 3WRU|1|A+3WRU|1|B, 2BEE|1|A+2BEE|1|B, 2ET3|1|A+2ET3|1|B, 2ESJ|1|A+2ESJ|1|B, 3TD1|1|B+3TD1|1|A, 4F8V|1|A+4F8V|1|B, 4F8U|1|A+4F8U|1|B, 4P3S|1|B+4P3S|1|A, 1J7T|1|A+1J7T|1|B, 1MWL|1|A+1MWL|1|B, 2ET4|1|A+2ET4|1|B, 2F4T|1|B+2F4T|1|A, 4GPW|1|A+4GPW|1|B, 4GPY|1|A+4GPY|1|B(1) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14PDQ|1|A+4PDQ|1|BTitle: Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-RAY DIFFRACTION323
21MWL|1|A+1MWL|1|BTitle: Crystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-RAY DIFFRACTION2.424
34F8U|1|A+4F8U|1|BTitle: Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-RAY DIFFRACTION222
44F8V|1|A+4F8V|1|BTitle: Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-RAY DIFFRACTION2.821
52ET3|1|A+2ET3|1|BTitle: Complex Between Gentamicin C1A and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.821
61J7T|1|A+1J7T|1|BTitle: Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-RAY DIFFRACTION2.521
72ET4|1|A+2ET4|1|BTitle: Complex Between Neomycin B and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.421
82ET5|1|A+2ET5|1|BTitle: Complex Between Ribostamycin and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.221
92ESJ|1|A+2ESJ|1|BTitle: Complex between Lividomycin A and the 16S-Rrna A SiteX-RAY DIFFRACTION2.221
101YRJ|1|A+1YRJ|1|BTitle: Crystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideX-RAY DIFFRACTION2.723
112PWT|1|A+2PWT|1|BTitle: Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.821
122BE0|1|A+2BE0|1|BTitle: Complex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.X-RAY DIFFRACTION2.6321
132BEE|1|A+2BEE|1|BTitle: Complex Between Paromomycin derivative JS4 and the 16S-Rrna A SiteX-RAY DIFFRACTION2.621
143S4P|1|A+3S4P|1|BTitle: Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-RAY DIFFRACTION2.5621
152F4T|1|B+2F4T|1|ATitle: Asite RNA + designer antibioticX-RAY DIFFRACTION323
165Z1H|1|B+5Z1H|1|ATitle: Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicinX-RAY DIFFRACTION2.423
173WRU|1|A+3WRU|1|BTitle: Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.321
181LC4|1|A+1LC4|1|BTitle: Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A SiteX-RAY DIFFRACTION2.5421
192ESI|1|A+2ESI|1|BTitle: Complex between Kanamycin A and the 16S-Rrna A Site.X-RAY DIFFRACTION323
204P20|1|A+4P20|1|BTitle: Crystal structures of the bacterial ribosomal decoding site complexed with amikacinX-RAY DIFFRACTION2.721
214GPY|1|A+4GPY|1|BTitle: Crystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinX-RAY DIFFRACTION2.822
224P3S|1|B+4P3S|1|ATitle: Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.321
235ZEI|1|A+5ZEI|1|BTitle: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.121
245ZEJ|1|A+5ZEJ|1|BTitle: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-RAY DIFFRACTION3.521
255ZEM|1|A+5ZEM|1|BTitle: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-RAY DIFFRACTION3.121
263TD1|1|B+3TD1|1|ATitle: Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.122
275Z1I|1|ATitle: Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicinX-RAY DIFFRACTION1.921
285XZ1|1|A+5XZ1|1|BTitle: Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-RAY DIFFRACTION3.0122
294K32|1|A+4K32|1|BTitle: Crystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.521
304GPW|1|A+4GPW|1|BTitle: Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)X-RAY DIFFRACTION322
314GPX|1|A+4GPX|1|BTitle: Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)X-RAY DIFFRACTION2.621
325XZ1|1|C+5XZ1|1|DTitle: Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-RAY DIFFRACTION3.0122

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