Equivalence class NR_4.0_65214.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5F9F|1|L (rep) | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-ray diffraction | 2.6 | 2016-01-13 | ||
| 2 | 5F9F|1|J | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-ray diffraction | 2.6 | 2016-01-13 | ||
| 3 | 5F9F|1|H | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-ray diffraction | 2.6 | 2016-01-13 | ||
| 4 | 5F9F|1|F | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-ray diffraction | 2.6 | 2016-01-13 | ||
| 5 | 5F9F|1|D | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-ray diffraction | 2.6 | 2016-01-13 | ||
| 6 | 5F9F|1|B | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-ray diffraction | 2.6 | 2016-01-13 | ||
| 7 | 5F9H|1|L | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 8 | 5F9H|1|J | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 9 | 5F9H|1|H | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 10 | 5F9H|1|F | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 11 | 5F9H|1|D | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 12 | 5F9H|1|B | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_65214.1 | NR_4.0_01076.1 | 6.0 | (6) 5F9F|1|H, 5F9F|1|D, 5F9F|1|L, 5F9F|1|F, 5F9F|1|B, 5F9F|1|J | (6) 5F9H|1|B, 5F9H|1|D, 5F9H|1|F, 5F9H|1|H, 5F9H|1|J, 5F9H|1|L | (6) 5F98|1|B, 5F98|1|F, 5F98|1|J, 5F98|1|H, 5F98|1|L, 5F98|1|D |
| NR_4.0_65214.1 | NR_4.0_08673.1 | 6.0 | (6) 5F9H|1|L, 5F9H|1|B, 5F9H|1|D, 5F9H|1|H, 5F9H|1|J, 5F9H|1|F | (6) 5F9F|1|J, 5F9F|1|F, 5F9F|1|L, 5F9F|1|B, 5F9F|1|H, 5F9F|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_65214.1 | NR_4.0_65214.2 | 7.0 | (12) 5F9H|1|J, 5F9F|1|B, 5F9F|1|F, 5F9F|1|L, 5F9H|1|F, 5F9H|1|D, 5F9F|1|J, 5F9H|1|H, 5F9F|1|D, 5F9H|1|B, 5F9H|1|L, 5F9F|1|H | (0) | (6) 5F98|1|J, 5F98|1|B, 5F98|1|F, 5F98|1|H, 5F98|1|D, 5F98|1|L |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5F9H|1|D | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 2 | 5F9H|1|H | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 3 | 5F9H|1|J | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 4 | 5F9H|1|B | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 5 | 5F9H|1|F | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 6 | 5F9H|1|L | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 7 | 5F9F|1|D | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-RAY DIFFRACTION | 2.6 | 24 | ||
| 8 | 5F9F|1|J | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-RAY DIFFRACTION | 2.6 | 24 | ||
| 9 | 5F9F|1|B | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-RAY DIFFRACTION | 2.6 | 24 | ||
| 10 | 5F9F|1|L | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-RAY DIFFRACTION | 2.6 | 24 | ||
| 11 | 5F9F|1|F | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-RAY DIFFRACTION | 2.6 | 24 | ||
| 12 | 5F9F|1|H | Title: Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA | X-RAY DIFFRACTION | 2.6 | 24 |
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