Equivalence class NR_4.0_31140.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4FAU|1|A (rep) | Group II catalytic intron D1-D4-1 | Group IIC intron | Oceanobacillus iheyensis | Bacteria | RF01998 | Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon | X-ray diffraction | 2.87 | 2012-11-14 |
| 2 | 4DS6|1|A | Group II catalytic intron D1-D4-1 | Mutant Group IIC Intron | Oceanobacillus iheyensis | Bacteria | RF01998 | Crystal structure of a group II intron in the pre-catalytic state | X-ray diffraction | 3.64 | 2012-04-18 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_31140.1 | NR_4.0_07658.1 | 6.0 | (1) 4DS6|1|A | (1) 4FAU|1|A | (4) 4Y1N|1|A, 4Y1O|1|B, 4Y1O|1|A, 4Y1N|1|B |
| NR_4.0_31140.1 | NR_4.0_71473.1 | 6.0 | (1) 4FAU|1|A | (1) 4DS6|1|A | (18) 3EOG|1|A, 4E8R|1|A, 4E8K|1|A, 4FAR|1|A, 3BWP|1|A, 4E8Q|1|A, 3IGI|1|A, 4FAQ|1|A, 4E8P|1|A, 4FB0|1|A, 3G78|1|A, 4E8V|1|A, 4E8N|1|A, 4FAX|1|A, 3EOH|1|A, 4E8T|1|A, 4E8M|1|A, 4FAW|1|A |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_31140.1 | NR_4.0_00206.1 | 7.0 | (2) 4FAU|1|A, 4DS6|1|A | (0) | (22) 3EOH|1|A, 4Y1N|1|A, 4E8P|1|A, 3EOG|1|A, 4FB0|1|A, 4E8N|1|A, 3BWP|1|A, 4FAX|1|A, 4E8M|1|A, 4Y1O|1|B, 4FAW|1|A, 4E8K|1|A, 4Y1O|1|A, 4FAR|1|A, 3IGI|1|A, 4FAQ|1|A, 3G78|1|A, 4Y1N|1|B, 4E8V|1|A, 4E8T|1|A, 4E8R|1|A, 4E8Q|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4FAU|1|A | Title: Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon | X-RAY DIFFRACTION | 2.87 | 395 | ||
| 2 | 4DS6|1|A | Title: Crystal structure of a group II intron in the pre-catalytic state | X-RAY DIFFRACTION | 3.64 | 393 |
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