NR_4.0_00206.1

Members (24)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4FAU\|1\|A (rep)	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon	X-ray diffraction	2.87	2012-11-14
2	4FAW\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(AUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment	X-ray diffraction	2.7	2012-11-14
3	4Y1O\|1\|A	Group II catalytic intron D1-D4-3	group II intron, domain 1	Oceanobacillus iheyensis	Bacteria	RF02001	Oceanobacillus iheyensis group II intron domain 1	X-ray diffraction	2.95	2015-10-14
4	4Y1N\|1\|A	Group II catalytic intron D1-D4-3	group II intron, domain 1	Oceanobacillus iheyensis	Bacteria	RF02001	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-ray diffraction	3	2015-10-14
5	3G78\|1\|A	Group II catalytic intron D1-D4-1	Group II intron, Ligated EXON product	Oceanobacillus iheyensis	Bacteria	RF01998	Insight into group II intron catalysis from revised crystal structure	X-ray diffraction	2.8	2010-02-16
6	3IGI\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(CPGPCPUPCPUPAPCPUPCPUPAP*U)-3'			RF01998	Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron	X-ray diffraction	3.12	2009-12-22
7	4Y1N\|1\|B	Group II catalytic intron D1-D4-3	group II intron, domain 1	Oceanobacillus iheyensis	Bacteria	RF02001	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-ray diffraction	3	2015-10-14
8	4E8Q\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+	X-ray diffraction	2.84	2012-11-14
9	4E8N\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+	X-ray diffraction	2.96	2012-11-14
10	4E8K\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(CPGAPUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate	X-ray diffraction	3.03	2012-11-14
11	4FAR\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon	X-ray diffraction	2.86	2012-11-14
12	4Y1O\|1\|B	Group II catalytic intron D1-D4-3	group II intron, domain 1	Oceanobacillus iheyensis	Bacteria	RF02001	Oceanobacillus iheyensis group II intron domain 1	X-ray diffraction	2.95	2015-10-14
13	4E8T\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(APUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)	X-ray diffraction	3.34	2012-11-14
14	4FB0\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+	X-ray diffraction	3.22	2012-11-14
15	4E8P\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+	X-ray diffraction	3.28	2012-11-14
16	4FAQ\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon	X-ray diffraction	3.11	2012-11-14
17	3BWP\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron			RF01998	Crystal structure of a self-spliced group II intron	X-ray diffraction	3.1	2008-04-15
18	4E8R\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+	X-ray diffraction	3.36	2012-11-14
19	4DS6\|1\|A	Group II catalytic intron D1-D4-1	Mutant Group IIC Intron	Oceanobacillus iheyensis	Bacteria	RF01998	Crystal structure of a group II intron in the pre-catalytic state	X-ray diffraction	3.64	2012-04-18
20	4E8M\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+	X-ray diffraction	3.5	2012-11-14
21	3EOH\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(UPUPAPUPUPA)-3'			RF01998	Refined group II intron structure	X-ray diffraction	3.12	2008-10-28
22	4FAX\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+	X-ray diffraction	3.1	2012-11-14
23	3EOG\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(UPUPAPUPUPA)-3'			RF01998	Co-crystallization showing exon recognition by a group II intron	X-ray diffraction	3.39	2008-10-28
24	4E8V\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+	X-ray diffraction	3.99	2012-11-14

Release history

Release	7.0
Date	2017-04-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_00206.1	NR_4.0_31140.1	7.0	(2) 4FAU\|1\|A, 4DS6\|1\|A	(22) 3EOH\|1\|A, 3EOG\|1\|A, 3BWP\|1\|A, 4Y1O\|1\|B, 4Y1O\|1\|A, 4Y1N\|1\|B, 4Y1N\|1\|A, 4FB0\|1\|A, 4FAX\|1\|A, 4FAW\|1\|A, 4FAR\|1\|A, 4FAQ\|1\|A, 4E8V\|1\|A, 4E8T\|1\|A, 4E8R\|1\|A, 4E8Q\|1\|A, 4E8P\|1\|A, 4E8N\|1\|A, 4E8M\|1\|A, 4E8K\|1\|A, 3IGI\|1\|A, 3G78\|1\|A	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_00206.1	NR_4.0_00206.2	8.0	(24) 3BWP\|1\|A, 4E8N\|1\|A, 4FAU\|1\|A, 4E8M\|1\|A, 4FAR\|1\|A, 4Y1O\|1\|B, 4E8K\|1\|A, 4FAQ\|1\|A, 4Y1O\|1\|A, 4DS6\|1\|A, 4E8V\|1\|A, 4Y1N\|1\|B, 3IGI\|1\|A, 4E8T\|1\|A, 4Y1N\|1\|A, 3G78\|1\|A, 4E8R\|1\|A, 4FB0\|1\|A, 3EOH\|1\|A, 4E8Q\|1\|A, 4FAX\|1\|A, 3EOG\|1\|A, 4E8P\|1\|A, 4FAW\|1\|A	(0)	(2) 5J02\|1\|A, 5J01\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4Y1O\|1\|A	Title: Oceanobacillus iheyensis group II intron domain 1	X-RAY DIFFRACTION	2.95	258
2	4Y1N\|1\|B	Title: Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-RAY DIFFRACTION	3	259
3	4Y1N\|1\|A	Title: Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-RAY DIFFRACTION	3	249
4	4Y1O\|1\|B	Title: Oceanobacillus iheyensis group II intron domain 1	X-RAY DIFFRACTION	2.95	256
5	4E8V\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+	X-RAY DIFFRACTION	3.99	389
6	4FAQ\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon	X-RAY DIFFRACTION	3.11	396
7	4E8K\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate	X-RAY DIFFRACTION	3.03	388
8	4E8T\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)	X-RAY DIFFRACTION	3.34	388
9	3IGI\|1\|A	Title: Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron	X-RAY DIFFRACTION	3.12	389
10	3G78\|1\|A	Title: Insight into group II intron catalysis from revised crystal structure	X-RAY DIFFRACTION	2.8	389
11	4FB0\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+	X-RAY DIFFRACTION	3.22	393
12	4E8M\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+	X-RAY DIFFRACTION	3.5	394
13	4E8P\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+	X-RAY DIFFRACTION	3.28	393
14	4E8N\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+	X-RAY DIFFRACTION	2.96	393
15	4E8Q\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+	X-RAY DIFFRACTION	2.84	393
16	4E8R\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+	X-RAY DIFFRACTION	3.36	393
17	4FAX\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+	X-RAY DIFFRACTION	3.1	392
18	4FAW\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment	X-RAY DIFFRACTION	2.7	390
19	4FAR\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.86	390
20	4FAU\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.87	395
21	4DS6\|1\|A	Title: Crystal structure of a group II intron in the pre-catalytic state	X-RAY DIFFRACTION	3.64	393
22	3EOH\|1\|A	Title: Refined group II intron structure	X-RAY DIFFRACTION	3.12	381
23	3BWP\|1\|A	Title: Crystal structure of a self-spliced group II intron	X-RAY DIFFRACTION	3.1	356
24	3EOG\|1\|A	Title: Co-crystallization showing exon recognition by a group II intron	X-RAY DIFFRACTION	3.39	388

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_00206.1 Obsolete

Release history

Parents

Children