NR_4.0_71473.1

Members (19)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4FAU\|1\|A (rep)	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon	X-ray diffraction	2.87	2012-11-14
2	4FAW\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(AUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment	X-ray diffraction	2.7	2012-11-14
3	3IGI\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(CPGPCPUPCPUPAPCPUPCPUPAP*U)-3'			RF01998	Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron	X-ray diffraction	3.12	2009-12-22
4	3G78\|1\|A	Group II catalytic intron D1-D4-1	Group II intron, Ligated EXON product	Oceanobacillus iheyensis	Bacteria	RF01998	Insight into group II intron catalysis from revised crystal structure	X-ray diffraction	2.8	2010-02-16
5	4E8Q\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+	X-ray diffraction	2.84	2012-11-14
6	4E8N\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+	X-ray diffraction	2.96	2012-11-14
7	4E8K\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(CPGAPUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate	X-ray diffraction	3.03	2012-11-14
8	4FAR\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon	X-ray diffraction	2.86	2012-11-14
9	4E8T\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(APUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)	X-ray diffraction	3.34	2012-11-14
10	4FB0\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+	X-ray diffraction	3.22	2012-11-14
11	4E8P\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+	X-ray diffraction	3.28	2012-11-14
12	4FAQ\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon	X-ray diffraction	3.11	2012-11-14
13	3BWP\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron			RF01998	Crystal structure of a self-spliced group II intron	X-ray diffraction	3.1	2008-04-15
14	4E8R\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+	X-ray diffraction	3.36	2012-11-14
15	4E8M\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+	X-ray diffraction	3.5	2012-11-14
16	3EOH\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(UPUPAPUPUPA)-3'			RF01998	Refined group II intron structure	X-ray diffraction	3.12	2008-10-28
17	4FAX\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+	X-ray diffraction	3.1	2012-11-14
18	3EOG\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron, 5'-R(UPUPAPUPUPA)-3'			RF01998	Co-crystallization showing exon recognition by a group II intron	X-ray diffraction	3.39	2008-10-28
19	4E8V\|1\|A	Group II catalytic intron D1-D4-1	Group IIC intron	Oceanobacillus iheyensis	Bacteria	RF01998	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+	X-ray diffraction	3.99	2012-11-14

Release history

Release	2.0	3.0	4.0	5.0
Date	2014-12-05	2016-07-25	2016-07-25	2016-07-25

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_71473.1	NR_4.0_31140.1	6.0	(1) 4FAU\|1\|A	(18) 3BWP\|1\|A, 3EOG\|1\|A, 3EOH\|1\|A, 3G78\|1\|A, 3IGI\|1\|A, 4E8K\|1\|A, 4E8M\|1\|A, 4E8N\|1\|A, 4E8P\|1\|A, 4E8Q\|1\|A, 4E8R\|1\|A, 4E8T\|1\|A, 4E8V\|1\|A, 4FAQ\|1\|A, 4FAR\|1\|A, 4FAW\|1\|A, 4FAX\|1\|A, 4FB0\|1\|A	(1) 4DS6\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4FAX\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+	X-RAY DIFFRACTION	3.1	392
2	4E8R\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+	X-RAY DIFFRACTION	3.36	393
3	4E8P\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+	X-RAY DIFFRACTION	3.28	393
4	4E8Q\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+	X-RAY DIFFRACTION	2.84	393
5	4E8N\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+	X-RAY DIFFRACTION	2.96	393
6	4FB0\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+	X-RAY DIFFRACTION	3.22	393
7	4E8M\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+	X-RAY DIFFRACTION	3.5	394
8	4FAW\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment	X-RAY DIFFRACTION	2.7	390
9	4FAR\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.86	390
10	4FAU\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.87	395
11	3G78\|1\|A	Title: Insight into group II intron catalysis from revised crystal structure	X-RAY DIFFRACTION	2.8	389
12	3IGI\|1\|A	Title: Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron	X-RAY DIFFRACTION	3.12	389
13	4E8T\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)	X-RAY DIFFRACTION	3.34	388
14	4E8K\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate	X-RAY DIFFRACTION	3.03	388
15	4FAQ\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon	X-RAY DIFFRACTION	3.11	396
16	4E8V\|1\|A	Title: Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+	X-RAY DIFFRACTION	3.99	389
17	3EOH\|1\|A	Title: Refined group II intron structure	X-RAY DIFFRACTION	3.12	381
18	3BWP\|1\|A	Title: Crystal structure of a self-spliced group II intron	X-RAY DIFFRACTION	3.1	356
19	3EOG\|1\|A	Title: Co-crystallization showing exon recognition by a group II intron	X-RAY DIFFRACTION	3.39	388

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_71473.1 Obsolete

Release history

Parents

Children