Equivalence class NR_4.0_10982.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4OQ9|1|s (rep) | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
2 | 4OQ9|1|f | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
3 | 4NIA|1|f | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
4 | 4OQ9|1|j | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
5 | 4NIA|1|j | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
6 | 4OQ9|1|k | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
7 | 4NIA|1|k | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
8 | 4OQ9|1|l | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
9 | 4NIA|1|l | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
10 | 4OQ9|1|o | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
11 | 4NIA|1|o | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
12 | 4NIA|1|p | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
13 | 4OQ9|1|p | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
14 | 4OQ9|1|q | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
15 | 4NIA|1|q | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
16 | 4OQ9|1|r | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
17 | 4NIA|1|r | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
18 | 4NIA|1|s | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 |
Release history
Release | 5.0 |
---|---|
Date | 2016-07-25 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_4.0_10982.1 | NR_all_04072.1 | 5.0 | (18) 4NIA|1|q, 4NIA|1|s, 4NIA|1|f, 4OQ9|1|s, 4OQ9|1|k, 4NIA|1|l, 4OQ9|1|p, 4OQ9|1|o, 4NIA|1|p, 4OQ9|1|r, 4OQ9|1|j, 4NIA|1|k, 4OQ9|1|q, 4NIA|1|r, 4OQ9|1|l, 4NIA|1|o, 4OQ9|1|f, 4NIA|1|j | (0) | (12) 2DB3|1|G, 3SQW|1|B, 3I61|1|B, 3I5X|1|B, 3FHT|1|D, 2DB3|1|H, 2DB3|1|F, 3I62|1|B, 2DB3|1|E, 3FHT|1|C, 3I5Y|1|B, 3SQX|1|B |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_4.0_10982.1 | NR_4.0_41248.1 | 6.0 | (9) 4OQ9|1|s, 4OQ9|1|j, 4OQ9|1|l, 4OQ9|1|o, 4OQ9|1|q, 4OQ9|1|f, 4OQ9|1|k, 4OQ9|1|p, 4OQ9|1|r | (9) 4NIA|1|o, 4NIA|1|l, 4NIA|1|j, 4NIA|1|s, 4NIA|1|q, 4NIA|1|p, 4NIA|1|r, 4NIA|1|f, 4NIA|1|k | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 4OQ9|1|f | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
2 | 4OQ9|1|k | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
3 | 4OQ9|1|j | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
4 | 4OQ9|1|l | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
5 | 4OQ9|1|o | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
6 | 4OQ9|1|r | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
7 | 4OQ9|1|q | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
8 | 4OQ9|1|p | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
9 | 4OQ9|1|s | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
10 | 4NIA|1|p | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | ||
11 | 4NIA|1|k | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | ||
12 | 4NIA|1|j | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | ||
13 | 4NIA|1|f | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | ||
14 | 4NIA|1|r | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | ||
15 | 4NIA|1|l | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | ||
16 | 4NIA|1|s | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | ||
17 | 4NIA|1|o | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | ||
18 | 4NIA|1|q | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
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