Equivalence class NR_2.0_49787.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3PF5|1|R (rep) | hexaribouracil (rU6) | Crystal structure of Bs-CspB in complex with rU6 | X-ray diffraction | 1.68 | 2011-09-21 | ||||
| 2 | 5ELX|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | Saccharomyces cerevisiae | Eukarya | S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3 | X-ray diffraction | 1.81 | 2016-02-24 | ||
| 3 | 3PEW|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3 | X-ray diffraction | 1.5 | 2011-03-23 | ||||
| 4 | 3PEY|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | S. cerevisiae Dbp5 bound to RNA and ADP BeF3 | X-ray diffraction | 1.4 | 2011-03-23 | ||||
| 5 | 4ALP|1|E | HEXA URIDINE | synthetic construct | Synthetic | The Lin28b Cold shock domain in complex with hexauridine | X-ray diffraction | 1.48 | 2012-09-05 | ||
| 6 | 3O8C|1|C | RNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3') | Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV | X-ray diffraction | 2 | 2011-01-05 | ||||
| 7 | 3PF5|1|S | hexaribouracil (rU6) | Crystal structure of Bs-CspB in complex with rU6 | X-ray diffraction | 1.68 | 2011-09-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.0_49787.1 | NR_all_14541.1 | 3.0 | (1) 3O8C|1|C | (6) 3PF5|1|S, 3PF5|1|R, 3PEY|1|B, 5ELX|1|B, 3PEW|1|B, 4ALP|1|E | (0) |
| NR_2.0_49787.1 | NR_all_22399.1 | 3.0 | (1) 3PF5|1|R | (6) 3PEW|1|B, 5ELX|1|B, 3O8C|1|C, 4ALP|1|E, 3PF5|1|S, 3PEY|1|B | (0) |
| NR_2.0_49787.1 | NR_all_35012.1 | 3.0 | (1) 4ALP|1|E | (6) 3O8C|1|C, 3PF5|1|S, 3PF5|1|R, 3PEY|1|B, 3PEW|1|B, 5ELX|1|B | (0) |
| NR_2.0_49787.1 | NR_all_38230.1 | 3.0 | (1) 3PF5|1|S | (6) 3PF5|1|R, 3PEY|1|B, 3PEW|1|B, 5ELX|1|B, 3O8C|1|C, 4ALP|1|E | (0) |
| NR_2.0_49787.1 | NR_all_75211.1 | 3.0 | (2) 3PEW|1|B, 3PEY|1|B | (5) 3O8C|1|C, 4ALP|1|E, 3PF5|1|S, 5ELX|1|B, 3PF5|1|R | (4) 3EX7|1|F, 3EX7|1|J, 2HYI|1|F, 2HYI|1|L |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3PF5|1|S | Title: Crystal structure of Bs-CspB in complex with rU6 | X-RAY DIFFRACTION | 1.68 | 1 | ||
| 2 | 3O8C|1|C | Title: Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV | X-RAY DIFFRACTION | 2 | 5 | ||
| 3 | 3PEW|1|B | Title: S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3 | X-RAY DIFFRACTION | 1.5 | 6 | ||
| 4 | 3PEY|1|B | Title: S. cerevisiae Dbp5 bound to RNA and ADP BeF3 | X-RAY DIFFRACTION | 1.4 | 6 | ||
| 5 | 5ELX|1|B | Title: S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3 | X-RAY DIFFRACTION | 1.81 | 6 | ||
| 6 | 3PF5|1|R | Title: Crystal structure of Bs-CspB in complex with rU6 | X-RAY DIFFRACTION | 1.68 | 9 | ||
| 7 | 4ALP|1|E | Title: The Lin28b Cold shock domain in complex with hexauridine | X-RAY DIFFRACTION | 1.48 | 6 |
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