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Equivalence class NR_all_75211.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13PEY|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 bound to RNA and ADP BeF3X-ray diffraction1.42011-03-23
23PEW|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-ray diffraction1.52011-03-23
32HYI|1|F5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-ray diffraction2.32006-08-15
43EX7|1|FRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-ray diffraction2.32008-12-09
53EX7|1|JRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-ray diffraction2.32008-12-09
62HYI|1|L5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-ray diffraction2.32006-08-15

Release history

Release2.0
Date2014-12-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_75211.1NR_1.5_49787.13.0(2) 3PEW|1|B, 3PEY|1|B(4) 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 3EX7|1|J(1) 4ALP|1|E
NR_all_75211.1NR_2.0_49787.13.0(2) 3PEY|1|B, 3PEW|1|B(4) 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 3EX7|1|J(5) 5ELX|1|B, 3O8C|1|C, 3PF5|1|R, 3PF5|1|S, 4ALP|1|E
NR_all_75211.1NR_2.5_49787.13.0(6) 2HYI|1|F, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B(0) (8) 3PF5|1|R, 5BTE|1|D, 3O8R|1|C, 5BTE|1|C, 3O8C|1|C, 4ALP|1|E, 3PF5|1|S, 5ELX|1|B
NR_all_75211.1NR_20.0_49787.13.0(6) 2HYI|1|L, 3EX7|1|F, 2HYI|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B(0) (13) 4ALP|1|E, 4Y91|1|O, 1N34|1|Z, 3PF5|1|S, 4Y91|1|N, 3O8R|1|C, 4NL3|1|R, 5BTE|1|C, 3O8C|1|C, 5ELX|1|B, 3PF5|1|R, 4NL3|1|Z, 5BTE|1|D
NR_all_75211.1NR_3.0_49787.13.0(6) 2HYI|1|F, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B(0) (10) 5BTE|1|D, 3PF5|1|R, 4Y91|1|O, 3O8C|1|C, 4ALP|1|E, 5BTE|1|C, 3O8R|1|C, 4Y91|1|N, 5ELX|1|B, 3PF5|1|S
NR_all_75211.1NR_3.5_49787.13.0(6) 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B, 2HYI|1|L, 2HYI|1|F(0) (12) 5BTE|1|C, 3O8R|1|C, 4NL3|1|R, 4ALP|1|E, 4Y91|1|O, 3O8C|1|C, 3PF5|1|S, 4Y91|1|N, 5ELX|1|B, 3PF5|1|R, 4NL3|1|Z, 5BTE|1|D
NR_all_75211.1NR_4.0_49787.13.0(6) 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B, 2HYI|1|F(0) (13) 1N34|1|Z, 3PF5|1|S, 4Y91|1|N, 5ELX|1|B, 3PF5|1|R, 4NL3|1|Z, 5BTE|1|D, 3O8R|1|C, 4NL3|1|R, 5BTE|1|C, 3O8C|1|C, 4ALP|1|E, 4Y91|1|O
NR_all_75211.1NR_all_49787.13.0(6) 2HYI|1|F, 3PEY|1|B, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B(0) (13) 3PF5|1|R, 4NL3|1|Z, 5BTE|1|D, 4NL3|1|R, 5BTE|1|C, 3O8R|1|C, 3O8C|1|C, 4ALP|1|E, 4Y91|1|O, 1N34|1|Z, 3PF5|1|S, 4Y91|1|N, 5ELX|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
12HYI|1|LTitle: Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
22HYI|1|FTitle: Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
33EX7|1|JTitle: The crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
43EX7|1|FTitle: The crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
53PEY|1|BTitle: S. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.46
63PEW|1|BTitle: S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.56

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