Equivalence class NR_all_41584.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4KZY|1|i (rep) | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-ray diffraction | 7.01 | 2013-07-24 |
2 | 4KZZ|1|i | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-ray diffraction | 7.03 | 2013-07-24 |
3 | 4KZX|1|i | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1. | X-ray diffraction | 7.81 | 2013-07-24 |
4 | 4UJC|1|C1 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
5 | 4UJD|1|C1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
6 | 4UJE|1|B1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
Release history
Release | 2.0 |
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Date | 2014-12-05 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_41584.1 | NR_20.0_33884.1 | 3.0 | (6) 4KZX|1|i, 4KZY|1|i, 4KZZ|1|i, 4UJC|1|C1, 4UJD|1|C1, 4UJE|1|B1 | (0) | (9) 3JAI|1|9, 4D61|1|1, 3JAH|1|9, 4D5L|1|1, 3JAG|1|9, 3JAN|1|S2, 5K0Y|1|A, 3JAJ|1|S2, 5FLX|1|1 |
NR_all_41584.1 | NR_all_33884.1 | 3.0 | (6) 4KZY|1|i, 4KZZ|1|i, 4UJC|1|C1, 4UJD|1|C1, 4UJE|1|B1, 4KZX|1|i | (0) | (9) 3JAJ|1|S2, 5FLX|1|1, 3JAI|1|9, 4D61|1|1, 3JAH|1|9, 4D5L|1|1, 3JAG|1|9, 3JAN|1|S2, 5K0Y|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 4UJE|1|B1 | Title: Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 1742 | ||
2 | 4UJD|1|C1 | Title: mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 1742 | ||
3 | 4UJC|1|C1 | Title: mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 1742 | ||
4 | 4KZZ|1|i | Title: Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 1797 | ||
5 | 4KZY|1|i | Title: Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 1840 | ||
6 | 4KZX|1|i | Title: Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 1797 |
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