Equivalence class NR_20.0_33884.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4KZY|1|i (rep) | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-ray diffraction | 7.01 | 2013-07-24 |
2 | 3JAG|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
3 | 3JAH|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 2015-08-12 |
4 | 3JAI|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
5 | 5FLX|1|1 | Small subunit ribosomal RNA | 18S RRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 40S HCV-IRES complex | Electron microscopy | 3.9 | 2015-12-23 |
6 | 5K0Y|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | Electron microscopy | 5.8 | 2016-07-13 |
7 | 4KZZ|1|i | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-ray diffraction | 7.03 | 2013-07-24 |
8 | 4KZX|1|i | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1. | X-ray diffraction | 7.81 | 2013-07-24 |
9 | 3JAN|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the scanning state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
10 | 3JAJ|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the engaged state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
11 | 4UJC|1|C1 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
12 | 4UJD|1|C1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
13 | 4D5L|1|1 | Small subunit ribosomal RNA | 18S RRNA 2 | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-02-04 |
14 | 4D61|1|1 | Small subunit ribosomal RNA | 18S RRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-03-04 |
15 | 4UJE|1|B1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 4UJD|1|C1 | Title: mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 1742 | ||
2 | 4UJC|1|C1 | Title: mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 1742 | ||
3 | 4D5L|1|1 | Title: Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 | ||
4 | 4D61|1|1 | Title: Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 | ||
5 | 4UJE|1|B1 | Title: Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 1742 | ||
6 | 3JAI|1|9 | Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 | ||
7 | 3JAG|1|9 | Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 | ||
8 | 3JAH|1|9 | Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 1719 | ||
9 | 3JAJ|1|S2 | Title: Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 | ||
10 | 3JAN|1|S2 | Title: Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 | ||
11 | 4KZZ|1|i | Title: Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 1797 | ||
12 | 4KZY|1|i | Title: Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 1840 | ||
13 | 4KZX|1|i | Title: Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 1797 | ||
14 | 5K0Y|1|A | Title: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | ELECTRON MICROSCOPY | 5.8 | 1776 | ||
15 | 5FLX|1|1 | Title: Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 1708 |
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