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Equivalence class NR_all_12314.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14PDQ|1|A+ 4PDQ|1|B (rep)RNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3')synthetic constructSyntheticCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-ray diffraction32015-01-07

Release history

Release3.0
Date2016-07-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_12314.1NR_20.0_33419.14.0(1) 4PDQ|1|A+4PDQ|1|B(0) (38) 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4P3T|1|A+4P3T|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5BWS|1|A+5BWS|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4P3S|1|B+4P3S|1|A, 4P43|1|B+4P43|1|A, 4WCS|1|A+4WCS|1|B, 5BXK|1|C+5BXK|1|D, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4P3U|1|C+4P3U|1|D, 4WCR|1|A+4WCR|1|B, 5BXK|1|A+5BXK|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4P3U|1|B+4P3U|1|A, 4WCQ|1|A+4WCQ|1|B, 5BWS|1|C+5BWS|1|D
NR_all_12314.1NR_3.0_33419.14.0(1) 4PDQ|1|A+4PDQ|1|B(0) (34) 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4P3U|1|C+4P3U|1|D, 5BWS|1|A+5BWS|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4P3U|1|B+4P3U|1|A, 4WCQ|1|A+4WCQ|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4P3T|1|A+4P3T|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4P3S|1|B+4P3S|1|A, 4P43|1|B+4P43|1|A, 5BWS|1|C+5BWS|1|D, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D
NR_all_12314.1NR_3.5_33419.14.0(1) 4PDQ|1|A+4PDQ|1|B(0) (38) 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4P3T|1|A+4P3T|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5BWS|1|A+5BWS|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4P3S|1|B+4P3S|1|A, 4P43|1|B+4P43|1|A, 4WCS|1|A+4WCS|1|B, 5BXK|1|C+5BXK|1|D, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4P3U|1|C+4P3U|1|D, 4WCR|1|A+4WCR|1|B, 5BXK|1|A+5BXK|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4P3U|1|B+4P3U|1|A, 4WCQ|1|A+4WCQ|1|B, 5BWS|1|C+5BWS|1|D
NR_all_12314.1NR_4.0_33419.14.0(1) 4PDQ|1|A+4PDQ|1|B(0) (38) 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 4P20|1|A+4P20|1|B, 4P3U|1|C+4P3U|1|D, 4WCR|1|A+4WCR|1|B, 5BXK|1|A+5BXK|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 4K32|1|A+4K32|1|B, 4P3U|1|B+4P3U|1|A, 4WCQ|1|A+4WCQ|1|B, 5BWS|1|C+5BWS|1|D, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 4P3T|1|A+4P3T|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5BWS|1|A+5BWS|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 4P3S|1|B+4P3S|1|A, 4P43|1|B+4P43|1|A, 4WCS|1|A+4WCS|1|B, 5BXK|1|C+5BXK|1|D
NR_all_12314.1NR_all_33419.14.0(1) 4PDQ|1|A+4PDQ|1|B(0) (38) 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4P3T|1|A+4P3T|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5BWS|1|A+5BWS|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4P3S|1|B+4P3S|1|A, 4P43|1|B+4P43|1|A, 4WCS|1|A+4WCS|1|B, 5BXK|1|C+5BXK|1|D, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4P3U|1|C+4P3U|1|D, 4WCR|1|A+4WCR|1|B, 5BXK|1|A+5BXK|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4P3U|1|B+4P3U|1|A, 4WCQ|1|A+4WCQ|1|B, 5BWS|1|C+5BWS|1|D

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14PDQ|1|A+4PDQ|1|BTitle: Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-RAY DIFFRACTION323

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