Equivalence class NR_4.0_97629.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1XPE|1|A+ 1XPE|1|B (rep) | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' | HIV-1 subtype B genomic RNA Dimerization Initiation Site | X-ray diffraction | 1.94 | 2005-10-18 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_97629.1 | NR_4.0_61190.1 | 6.0 | (1) 1XPE|1|A+1XPE|1|B | (0) | (17) 1K9W|1|B, 1K9W|1|C, 1K9W|1|D, 1XP7|1|A+1XP7|1|B, 1XPF|1|A+1XPF|1|B, 1Y3O|1|A+1Y3O|1|B, 1Y3S|1|A+1Y3S|1|B, 1YXP|1|A+1YXP|1|B, 1ZCI|1|A+1ZCI|1|B, 1ZCI|1|C+1ZCI|1|D, 2B8R|1|A+2B8R|1|B, 2B8S|1|A+2B8S|1|B, 2FCX|1|A+2FCX|1|B, 2FCY|1|A+2FCY|1|B, 2FCZ|1|A+2FCZ|1|B, 2FCZ|1|C+2FCZ|1|D, 2FD0|1|A+2FD0|1|B |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_97629.1 | NR_4.0_32448.1 | 7.0 | (1) 1XPE|1|A+1XPE|1|B | (0) | (17) 1K9W|1|B, 1K9W|1|C, 1K9W|1|D, 1XP7|1|A+1XP7|1|B, 1XPF|1|A+1XPF|1|B, 1Y3O|1|A+1Y3O|1|B, 1Y3S|1|A+1Y3S|1|B, 1YXP|1|A+1YXP|1|B, 1ZCI|1|A+1ZCI|1|B, 1ZCI|1|C+1ZCI|1|D, 2B8R|1|A+2B8R|1|B, 2B8S|1|A+2B8S|1|B, 2FCX|1|A+2FCX|1|B, 2FCY|1|A+2FCY|1|B, 2FCZ|1|A+2FCZ|1|B, 2FCZ|1|C+2FCZ|1|D, 2FD0|1|A+2FD0|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1XPE|1|A+1XPE|1|B | Title: HIV-1 subtype B genomic RNA Dimerization Initiation Site | X-RAY DIFFRACTION | 1.94 | 23 |
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