Equivalence class NR_4.0_61190.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1XPE|1|A+ 1XPE|1|B (rep) | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' | HIV-1 subtype B genomic RNA Dimerization Initiation Site | X-ray diffraction | 1.94 | 2005-10-18 | ||||
| 2 | 2B8S|1|A+ 2B8S|1|B | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | Structure of HIV-1(MAL) genomic RNA DIS | X-ray diffraction | 2.76 | 2005-10-25 | ||||
| 3 | 2B8R|1|A+ 2B8R|1|B | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' | Structure oF HIV-1(LAI) genomic RNA DIS | X-ray diffraction | 2.6 | 2005-10-25 | ||||
| 4 | 1XP7|1|A+ 1XP7|1|B | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 subtype F genomic RNA Dimerization Initiation Site | X-ray diffraction | 2.5 | 2005-10-18 | ||||
| 5 | 1XPF|1|A+ 1XPF|1|B | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 subtype A genomic RNA Dimerization Initiation Site | X-ray diffraction | 2.3 | 2005-10-18 | ||||
| 6 | 1ZCI|1|A+ 1ZCI|1|B | 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 DIS RNA subtype F- monoclinic form | X-ray diffraction | 1.65 | 2006-01-31 | ||||
| 7 | 2FCX|1|A+ 2FCX|1|B | HIV-1 DIS RNA | HIV-1 DIS kissing-loop in complex with neamine | X-ray diffraction | 2 | 2006-05-16 | ||||
| 8 | 2FD0|1|A+ 2FD0|1|B | HIV-1 DIS RNA | HIV-1 DIS kissing-loop in complex with lividomycin | X-ray diffraction | 1.8 | 2006-05-16 | ||||
| 9 | 1Y3S|1|A+ 1Y3S|1|B | 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 DIS RNA subtype F- MPD form | X-ray diffraction | 2.25 | 2005-11-08 | ||||
| 10 | 1YXP|1|A+ 1YXP|1|B | 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 DIS RNA subtype F- Zn soaked | X-ray diffraction | 2.4 | 2006-01-31 | ||||
| 11 | 1Y3O|1|A+ 1Y3O|1|B | 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 DIS RNA subtype F- Mn soaked | X-ray diffraction | 2.7 | 2005-11-08 | ||||
| 12 | 2FCZ|1|A+ 2FCZ|1|B | HIV-1 DIS RNA | HIV-1 DIS kissing-loop in complex with ribostamycin | X-ray diffraction | 2.01 | 2006-05-16 | ||||
| 13 | 2FCY|1|A+ 2FCY|1|B | HIV-1 DIS RNA | HIV-1 DIS kissing-loop in complex with Neomycin | X-ray diffraction | 2.2 | 2006-05-16 | ||||
| 14 | 1ZCI|1|C+ 1ZCI|1|D | 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 DIS RNA subtype F- monoclinic form | X-ray diffraction | 1.65 | 2006-01-31 | ||||
| 15 | 2FCZ|1|C+ 2FCZ|1|D | HIV-1 DIS RNA | HIV-1 DIS kissing-loop in complex with ribostamycin | X-ray diffraction | 2.01 | 2006-05-16 | ||||
| 16 | 1K9W|1|B | HIV-1 DIS(Mal)UU RNA | HIV-1(MAL) RNA Dimerization Initiation Site | X-ray diffraction | 3.1 | 2001-11-30 | ||||
| 17 | 1K9W|1|D | HIV-1 DIS(Mal)UU RNA | HIV-1(MAL) RNA Dimerization Initiation Site | X-ray diffraction | 3.1 | 2001-11-30 | ||||
| 18 | 1K9W|1|C | HIV-1 DIS(Mal)UU RNA | HIV-1(MAL) RNA Dimerization Initiation Site | X-ray diffraction | 3.1 | 2001-11-30 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_61190.1 | NR_all_59443.1 | 5.0 | (18) 2FCZ|1|C+2FCZ|1|D, 2B8R|1|A+2B8R|1|B, 1Y3S|1|A+1Y3S|1|B, 1K9W|1|D, 2FCX|1|A+2FCX|1|B, 1ZCI|1|A+1ZCI|1|B, 1XPE|1|A+1XPE|1|B, 2FCZ|1|A+2FCZ|1|B, 1Y3O|1|A+1Y3O|1|B, 1K9W|1|C, 2FCY|1|A+2FCY|1|B, 1XPF|1|A+1XPF|1|B, 1K9W|1|B, 2FD0|1|A+2FD0|1|B, 2B8S|1|A+2B8S|1|B, 1YXP|1|A+1YXP|1|B, 1XP7|1|A+1XP7|1|B, 1ZCI|1|C+1ZCI|1|D | (0) | (19) 2QEK|1|A+2QEK|1|B, 2OJ0|1|A+2OJ0|1|B, 3C44|1|A+3C44|1|B, 1Y73|1|B+1Y73|1|A, 1Y95|1|B+1Y95|1|A, 1Y90|1|B+1Y90|1|A, 1JU1|1|A+1JU1|1|B, 1NLC|1|B+1NLC|1|A, 1Y99|1|A+1Y99|1|B, 1WVD|1|B+1WVD|1|A, 1O3Z|1|B+1O3Z|1|A, 3DVV|1|A+3DVV|1|B, 1Y6S|1|B+1Y6S|1|A, 3FAR|1|A+3FAR|1|B, 462D|1|B+462D|1|A, 2OIJ|1|A+2OIJ|1|B, 1JTJ|1|A, 2OIY|1|A+2OIY|1|B, 1Y6T|1|B+1Y6T|1|A |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_61190.1 | NR_4.0_97629.1 | 6.0 | (1) 1XPE|1|A+1XPE|1|B | (17) 1K9W|1|B, 1K9W|1|C, 1K9W|1|D, 1XP7|1|A+1XP7|1|B, 1XPF|1|A+1XPF|1|B, 1Y3O|1|A+1Y3O|1|B, 1Y3S|1|A+1Y3S|1|B, 1YXP|1|A+1YXP|1|B, 1ZCI|1|A+1ZCI|1|B, 1ZCI|1|C+1ZCI|1|D, 2B8R|1|A+2B8R|1|B, 2B8S|1|A+2B8S|1|B, 2FCX|1|A+2FCX|1|B, 2FCY|1|A+2FCY|1|B, 2FCZ|1|A+2FCZ|1|B, 2FCZ|1|C+2FCZ|1|D, 2FD0|1|A+2FD0|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1ZCI|1|C+1ZCI|1|D | Title: HIV-1 DIS RNA subtype F- monoclinic form | X-RAY DIFFRACTION | 1.65 | 22 | ||
| 2 | 1ZCI|1|A+1ZCI|1|B | Title: HIV-1 DIS RNA subtype F- monoclinic form | X-RAY DIFFRACTION | 1.65 | 22 | ||
| 3 | 1XPE|1|A+1XPE|1|B | Title: HIV-1 subtype B genomic RNA Dimerization Initiation Site | X-RAY DIFFRACTION | 1.94 | 23 | ||
| 4 | 2B8R|1|A+2B8R|1|B | Title: Structure oF HIV-1(LAI) genomic RNA DIS | X-RAY DIFFRACTION | 2.6 | 23 | ||
| 5 | 2B8S|1|A+2B8S|1|B | Title: Structure of HIV-1(MAL) genomic RNA DIS | X-RAY DIFFRACTION | 2.76 | 23 | ||
| 6 | 1XP7|1|A+1XP7|1|B | Title: HIV-1 subtype F genomic RNA Dimerization Initiation Site | X-RAY DIFFRACTION | 2.5 | 23 | ||
| 7 | 1Y3O|1|A+1Y3O|1|B | Title: HIV-1 DIS RNA subtype F- Mn soaked | X-RAY DIFFRACTION | 2.7 | 22 | ||
| 8 | 1Y3S|1|A+1Y3S|1|B | Title: HIV-1 DIS RNA subtype F- MPD form | X-RAY DIFFRACTION | 2.25 | 22 | ||
| 9 | 1YXP|1|A+1YXP|1|B | Title: HIV-1 DIS RNA subtype F- Zn soaked | X-RAY DIFFRACTION | 2.4 | 22 | ||
| 10 | 1XPF|1|A+1XPF|1|B | Title: HIV-1 subtype A genomic RNA Dimerization Initiation Site | X-RAY DIFFRACTION | 2.3 | 23 | ||
| 11 | 1K9W|1|D | Title: HIV-1(MAL) RNA Dimerization Initiation Site | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 12 | 1K9W|1|B | Title: HIV-1(MAL) RNA Dimerization Initiation Site | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 13 | 2FD0|1|A+2FD0|1|B | Title: HIV-1 DIS kissing-loop in complex with lividomycin | X-RAY DIFFRACTION | 1.8 | 22 | ||
| 14 | 2FCY|1|A+2FCY|1|B | Title: HIV-1 DIS kissing-loop in complex with Neomycin | X-RAY DIFFRACTION | 2.2 | 22 | ||
| 15 | 2FCZ|1|C+2FCZ|1|D | Title: HIV-1 DIS kissing-loop in complex with ribostamycin | X-RAY DIFFRACTION | 2.01 | 22 | ||
| 16 | 2FCX|1|A+2FCX|1|B | Title: HIV-1 DIS kissing-loop in complex with neamine | X-RAY DIFFRACTION | 2 | 22 | ||
| 17 | 2FCZ|1|A+2FCZ|1|B | Title: HIV-1 DIS kissing-loop in complex with ribostamycin | X-RAY DIFFRACTION | 2.01 | 22 | ||
| 18 | 1K9W|1|C | Title: HIV-1(MAL) RNA Dimerization Initiation Site | X-RAY DIFFRACTION | 3.1 | 23 |
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