RNA 3D Hub //

Equivalence class NR_4.0_97398.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V4Q|1|CA (rep)Small subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
24V4Q|1|AASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
35J91|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
45J91|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
55J88|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
65IQR|1|2Small subunit ribosomal RNASSU rRNAEscherichia coliBacteriaRF00177Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
74V50|1|AASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
85J88|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
95AFI|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF001772.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
104V6E|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.712014-07-09
114V50|1|CASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
124V6E|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.712014-07-09
135JTE|1|AASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNAElectron microscopy3.62016-07-20
145JU8|1|AASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNAElectron microscopy3.62016-07-20
154V85|1|AASmall subunit ribosomal RNA16S rRNARF00177Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.22014-07-09
163JCE|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
173JCJ|1|gSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit associationElectron microscopy3.72016-03-09
185L3P|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complexElectron microscopy3.72016-07-20
193JBV|1|ASmall subunit ribosomal RNARNA (1530-MER)Escherichia coliBacteriaRF00177Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.322016-01-27
203JCD|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)Electron microscopy3.72016-01-13
213JBU|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.642016-01-27

Release history

Release6.0
Date2017-04-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_97398.1NR_4.0_59913.26.0(21) 4V6E|1|AA, 4V50|1|CA, 5AFI|1|a, 4V85|1|AA, 5J88|1|BA, 3JBV|1|A, 5J88|1|AA, 3JBU|1|A, 5JTE|1|AA, 3JCJ|1|g, 5J91|1|AA, 3JCE|1|a, 5L3P|1|a, 4V50|1|AA, 5JU8|1|AA, 4V4Q|1|CA, 4V6E|1|CA, 5IQR|1|2, 3JCD|1|a, 4V4Q|1|AA, 5J91|1|BA(0) (72) 4V9O|1|FA, 4V57|1|CA, 4V7S|1|CA, 4U27|1|CA, 4V55|1|CA, 4V9P|1|BA, 3JA1|1|SA, 4V5B|1|DA, 4U25|1|CA, 4V7T|1|CA, 4WF1|1|AA, 4V4H|1|CA, 5JC9|1|AA, 4V56|1|CA, 4V7V|1|CA, 4U1U|1|CA, 4U26|1|CA, 4WOI|1|AA, 3J9Y|1|a, 4V9C|1|AA, 4V9P|1|FA, 4V64|1|CA, 4WWW|1|QA, 4V7U|1|CA, 4V52|1|CA, 4V9D|1|AA, 4U1V|1|CA, 4V6C|1|CA, 4V53|1|CA, 4U20|1|CA, 4YBB|1|AA, 4V54|1|CA, 4V9O|1|BA, 4U24|1|CA, 4V6D|1|CA, 5J8A|1|AA, 4V6C|1|AA, 4U25|1|AA, 4V53|1|AA, 4V9D|1|BA, 5J8A|1|BA, 4V56|1|AA, 4U20|1|AA, 4V6D|1|AA, 4V9O|1|HA, 4U26|1|AA, 4WWW|1|XA, 4V54|1|AA, 4V7T|1|AA, 5JC9|1|BA, 4U24|1|AA, 4V9P|1|DA, 4YBB|1|BA, 4V7U|1|AA, 4V9O|1|DA, 4V57|1|AA, 4V9P|1|HA, 4V7S|1|AA, 4U27|1|AA, 4V7V|1|AA, 3J9Z|1|SA, 4V5B|1|BA, 4V9C|1|CA, 4V4H|1|AA, 4U1U|1|AA, 4WF1|1|CA, 4V52|1|AA, 4V89|1|AA, 4U1V|1|AA, 4V64|1|AA, 4WOI|1|DA, 4V55|1|AA

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_97398.1NR_4.0_47864.17.0(21) 4V50|1|AA, 5J91|1|BA, 5IQR|1|2, 3JCJ|1|g, 4V6E|1|CA, 5JU8|1|AA, 4V4Q|1|CA, 3JBU|1|A, 5J91|1|AA, 5AFI|1|a, 4V6E|1|AA, 3JCE|1|a, 5JTE|1|AA, 4V4Q|1|AA, 5J88|1|BA, 4V85|1|AA, 3JBV|1|A, 5J88|1|AA, 5L3P|1|a, 3JCD|1|a, 4V50|1|CA(0) (72) 4V9O|1|FA, 4V55|1|CA, 4V9P|1|BA, 4U25|1|CA, 4U27|1|AA, 4V9P|1|HA, 4V7V|1|AA, 4V7U|1|AA, 4V4H|1|AA, 4V9C|1|AA, 4U1V|1|CA, 4U1U|1|CA, 4V9D|1|AA, 4V6D|1|AA, 4U24|1|AA, 4V7S|1|AA, 4YBB|1|BA, 5JC9|1|AA, 4V7T|1|CA, 3J9Y|1|a, 4V56|1|CA, 4V5B|1|BA, 4U1U|1|AA, 4WF1|1|CA, 4V64|1|CA, 4WWW|1|QA, 4V53|1|CA, 4V52|1|CA, 4V9O|1|DA, 4V55|1|AA, 4U25|1|AA, 4U26|1|CA, 4V9P|1|FA, 4V7U|1|CA, 4V89|1|AA, 4V52|1|AA, 4U20|1|CA, 4V6C|1|CA, 5J8A|1|BA, 4V7T|1|AA, 4V57|1|CA, 3JA1|1|SA, 4V64|1|AA, 4WOI|1|DA, 4V6C|1|AA, 4YBB|1|AA, 4V54|1|CA, 4V9O|1|BA, 4V9O|1|HA, 4V56|1|AA, 4U26|1|AA, 4V9P|1|DA, 4U27|1|CA, 4V7V|1|CA, 4V4H|1|CA, 4U1V|1|AA, 4V9C|1|CA, 4U20|1|AA, 4V9D|1|BA, 4V6D|1|CA, 4U24|1|CA, 4V7S|1|CA, 5J8A|1|AA, 5JC9|1|BA, 4V57|1|AA, 3J9Z|1|SA, 4V5B|1|DA, 4WOI|1|AA, 4WF1|1|AA, 4V53|1|AA, 4WWW|1|XA, 4V54|1|AA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14V4Q|1|CATitle: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.461530
24V85|1|AATitle: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.21532
35J88|1|AATitle: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.321523
45J91|1|AATitle: Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961523
55J88|1|BATitle: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.321522
65J91|1|BATitle: Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961522
74V4Q|1|AATitle: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.461530
84V50|1|CATitle: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.221530
94V50|1|AATitle: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.221530
104V6E|1|CATitle: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.711530
113JCJ|1|gTitle: Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit associationELECTRON MICROSCOPY3.71539
125JTE|1|AATitle: Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNAELECTRON MICROSCOPY3.61539
135JU8|1|AATitle: Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNAELECTRON MICROSCOPY3.61539
145IQR|1|2Title: Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY31522
155L3P|1|aTitle: Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complexELECTRON MICROSCOPY3.71528
165AFI|1|aTitle: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.91528
174V6E|1|AATitle: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.711533
183JCE|1|aTitle: Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.21533
193JCD|1|aTitle: Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.71533
203JBU|1|ATitle: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.641530
213JBV|1|ATitle: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.321530

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.1425 s