Equivalence class NR_4.0_97271.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4J7L|1|B (rep) | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-ray diffraction | 1.8 | 2013-03-27 | ||
| 2 | 5FN1|1|B | 5'-R(*UP*UP*UP*UP*UP)-3' | Pepino mosaic virus | Viruses | Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus) | Electron microscopy | 3.9 | 2015-12-30 | ||
| 3 | 5BUD|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Eukarya | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | ||
| 4 | 5BUD|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Eukarya | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | ||
| 5 | 4J7M|1|B | RNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3') | synthetic construct | Synthetic | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-ray diffraction | 1.7 | 2013-03-27 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_97271.1 | NR_all_23842.1 | 4.0 | (1) 5FN1|1|B | (4) 5BUD|1|E, 5BUD|1|D, 4J7M|1|B, 4J7L|1|B | (0) |
| NR_4.0_97271.1 | NR_all_30363.1 | 4.0 | (1) 5BUD|1|D | (4) 5FN1|1|B, 5BUD|1|E, 4J7M|1|B, 4J7L|1|B | (0) |
| NR_4.0_97271.1 | NR_all_35505.1 | 4.0 | (1) 4J7M|1|B | (4) 5FN1|1|B, 5BUD|1|E, 5BUD|1|D, 4J7L|1|B | (0) |
| NR_4.0_97271.1 | NR_all_42873.1 | 4.0 | (1) 5BUD|1|E | (4) 5FN1|1|B, 5BUD|1|D, 4J7M|1|B, 4J7L|1|B | (0) |
| NR_4.0_97271.1 | NR_all_75393.1 | 4.0 | (1) 4J7L|1|B | (4) 5BUD|1|E, 5BUD|1|D, 4J7M|1|B, 5FN1|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4J7M|1|B | Title: Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-RAY DIFFRACTION | 1.7 | 3 | ||
| 2 | 5BUD|1|E | Title: Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 5 | ||
| 3 | 5BUD|1|D | Title: Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 4 | ||
| 4 | 4J7L|1|B | Title: Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-RAY DIFFRACTION | 1.8 | 5 | ||
| 5 | 5FN1|1|B | Title: Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus) | ELECTRON MICROSCOPY | 3.9 | 5 |
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