Equivalence class NR_4.0_95126.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2Z75|1|B (rep) | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-ray diffraction | 1.7 | 2007-09-04 |
| 2 | 2GCV|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.1 | 2006-09-26 | ||
| 3 | 2Z74|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | RF00234 | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.2 | 2007-09-04 | ||
| 4 | 2H0X|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.3 | 2006-09-26 | ||
| 5 | 2H0W|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.4 | 2006-09-26 | ||
| 6 | 2GCS|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.1 | 2006-09-26 | ||
| 7 | 3B4B|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate with 2'5'-phosphodiester linkage, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-ray diffraction | 2.7 | 2007-12-11 |
| 8 | 2HO6|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate RNA, glmS ribozyme RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.8 | 2006-09-26 | ||
| 9 | 2HO7|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate RNA, glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.9 | 2006-09-26 | ||
| 10 | 2H0Z|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.7 | 2006-09-26 | ||
| 11 | 2H0S|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.35 | 2006-09-26 | ||
| 12 | 3B4A|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate RNA, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-ray diffraction | 2.7 | 2007-12-11 |
| 13 | 4MEG|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS triple mutant ribozyme, (121-MER) ribozyme | RF00234 | In vitro evolved glmS ribozyme triple mutant, magnesium ion complex | X-ray diffraction | 3.1 | 2013-10-16 | ||
| 14 | 3B4C|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate with a 2'5'-phosphodiester linkage, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-ray diffraction | 3 | 2007-12-11 |
| 15 | 4MEH|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS triple mutant ribozyme, (122-MER) ribozyme | RF00234 | In vitro evolved glmS ribozyme triple mutant, calcium ion complex | X-ray diffraction | 3.12 | 2013-10-16 |
Release history
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4MEG|1|B | Title: In vitro evolved glmS ribozyme triple mutant, magnesium ion complex | X-RAY DIFFRACTION | 3.1 | 121 | ||
| 2 | 2H0S|1|B | Title: Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.35 | 122 | ||
| 3 | 2GCV|1|B | Title: Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 | ||
| 4 | 2H0W|1|B | Title: Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.4 | 122 | ||
| 5 | 2HO6|1|B | Title: Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.8 | 122 | ||
| 6 | 2HO7|1|B | Title: Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.9 | 122 | ||
| 7 | 3B4B|1|B | Title: T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 2.7 | 123 | ||
| 8 | 2GCS|1|B | Title: Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 | ||
| 9 | 2H0X|1|B | Title: Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.3 | 122 | ||
| 10 | 2Z75|1|B | Title: T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 1.7 | 123 | ||
| 11 | 2H0Z|1|B | Title: Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.7 | 123 | ||
| 12 | 2Z74|1|B | Title: T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.2 | 123 | ||
| 13 | 3B4A|1|B | Title: T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 2.7 | 121 | ||
| 14 | 3B4C|1|B | Title: T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 3 | 121 | ||
| 15 | 4MEH|1|B | Title: In vitro evolved glmS ribozyme triple mutant, calcium ion complex | X-RAY DIFFRACTION | 3.12 | 122 |
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