Equivalence class NR_4.0_92006.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3OL9|1|B+ 3OL9|1|F+ 3OL9|1|C+ 3OL9|1|G+ 3OL9|1|D+ 3OL9|1|H (rep) | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*(O2C))-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 3'-deoxy-CTP | X-ray diffraction | 2.25 | 2010-12-22 | ||||
2 | 3OL9|1|J+ 3OL9|1|N+ 3OL9|1|K+ 3OL9|1|O+ 3OL9|1|L+ 3OL9|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*(O2C))-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 3'-deoxy-CTP | X-ray diffraction | 2.25 | 2010-12-22 | ||||
3 | 3OLB|1|J+ 3OLB|1|N+ 3OLB|1|K+ 3OLB|1|O+ 3OLB|1|L+ 3OLB|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*U*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp | X-ray diffraction | 2.41 | 2010-12-22 | ||||
4 | 3OLB|1|B+ 3OLB|1|F+ 3OLB|1|C+ 3OLB|1|G+ 3OLB|1|D+ 3OLB|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*U*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp | X-ray diffraction | 2.41 | 2010-12-22 | ||||
5 | 3OL6|1|B+ 3OL6|1|F+ 3OL6|1|C+ 3OL6|1|G+ 3OL6|1|D+ 3OL6|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex | X-ray diffraction | 2.5 | 2010-12-22 | ||||
6 | 3OL6|1|J+ 3OL6|1|N+ 3OL6|1|K+ 3OL6|1|O+ 3OL6|1|L+ 3OL6|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex | X-ray diffraction | 2.5 | 2010-12-22 | ||||
7 | 3OLA|1|J+ 3OLA|1|N+ 3OLA|1|K+ 3OLA|1|O+ 3OLA|1|L+ 3OLA|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 2'-deoxy-CTP | X-ray diffraction | 2.55 | 2010-12-22 | ||||
8 | 3OLA|1|F+ 3OLA|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 2'-deoxy-CTP | X-ray diffraction | 2.55 | 2010-12-22 | ||||
9 | 3OLA|1|B+ 3OLA|1|D | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 2'-deoxy-CTP | X-ray diffraction | 2.55 | 2010-12-22 | ||||
10 | 3OL8|1|B+ 3OL8|1|F+ 3OL8|1|C+ 3OL8|1|G+ 3OL8|1|D+ 3OL8|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with CTP-Mn | X-ray diffraction | 2.75 | 2010-12-22 | ||||
11 | 3OL7|1|J+ 3OL7|1|N+ 3OL7|1|K+ 3OL7|1|O+ 3OL7|1|L+ 3OL7|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with CTP | X-ray diffraction | 2.7 | 2010-12-22 | ||||
12 | 3OL7|1|B+ 3OL7|1|F+ 3OL7|1|C+ 3OL7|1|G+ 3OL7|1|D+ 3OL7|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with CTP | X-ray diffraction | 2.7 | 2010-12-22 | ||||
13 | 3OL8|1|J+ 3OL8|1|N+ 3OL8|1|K+ 3OL8|1|O+ 3OL8|1|L+ 3OL8|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with CTP-Mn | X-ray diffraction | 2.75 | 2010-12-22 |
Release history
Parents
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 3OLA|1|J+3OLA|1|N+3OLA|1|K+3OLA|1|O+3OLA|1|L+3OLA|1|P | Title: Poliovirus polymerase elongation complex with 2'-deoxy-CTP | X-RAY DIFFRACTION | 2.55 | 18 | ||
2 | 3OL6|1|B+3OL6|1|F+3OL6|1|C+3OL6|1|G+3OL6|1|D+3OL6|1|H | Title: Poliovirus polymerase elongation complex | X-RAY DIFFRACTION | 2.5 | 18 | ||
3 | 3OLB|1|B+3OLB|1|F+3OLB|1|C+3OLB|1|G+3OLB|1|D+3OLB|1|H | Title: Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp | X-RAY DIFFRACTION | 2.41 | 18 | ||
4 | 3OL7|1|B+3OL7|1|F+3OL7|1|C+3OL7|1|G+3OL7|1|D+3OL7|1|H | Title: Poliovirus polymerase elongation complex with CTP | X-RAY DIFFRACTION | 2.7 | 18 | ||
5 | 3OL8|1|B+3OL8|1|F+3OL8|1|C+3OL8|1|G+3OL8|1|D+3OL8|1|H | Title: Poliovirus polymerase elongation complex with CTP-Mn | X-RAY DIFFRACTION | 2.75 | 17 | ||
6 | 3OLA|1|F+3OLA|1|H | Title: Poliovirus polymerase elongation complex with 2'-deoxy-CTP | X-RAY DIFFRACTION | 2.55 | 17 | ||
7 | 3OLA|1|B+3OLA|1|D | Title: Poliovirus polymerase elongation complex with 2'-deoxy-CTP | X-RAY DIFFRACTION | 2.55 | 17 | ||
8 | 3OLB|1|J+3OLB|1|N+3OLB|1|K+3OLB|1|O+3OLB|1|L+3OLB|1|P | Title: Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp | X-RAY DIFFRACTION | 2.41 | 19 | ||
9 | 3OL6|1|J+3OL6|1|N+3OL6|1|K+3OL6|1|O+3OL6|1|L+3OL6|1|P | Title: Poliovirus polymerase elongation complex | X-RAY DIFFRACTION | 2.5 | 19 | ||
10 | 3OL7|1|J+3OL7|1|N+3OL7|1|K+3OL7|1|O+3OL7|1|L+3OL7|1|P | Title: Poliovirus polymerase elongation complex with CTP | X-RAY DIFFRACTION | 2.7 | 16 | ||
11 | 3OL8|1|J+3OL8|1|N+3OL8|1|K+3OL8|1|O+3OL8|1|L+3OL8|1|P | Title: Poliovirus polymerase elongation complex with CTP-Mn | X-RAY DIFFRACTION | 2.75 | 17 | ||
12 | 3OL9|1|J+3OL9|1|N+3OL9|1|K+3OL9|1|O+3OL9|1|L+3OL9|1|P | Title: Poliovirus polymerase elongation complex with 3'-deoxy-CTP | X-RAY DIFFRACTION | 2.25 | 19 | ||
13 | 3OL9|1|B+3OL9|1|F+3OL9|1|C+3OL9|1|G+3OL9|1|D+3OL9|1|H | Title: Poliovirus polymerase elongation complex with 3'-deoxy-CTP | X-RAY DIFFRACTION | 2.25 | 18 |
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