Equivalence class NR_4.0_91178.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5DH6|1|A (rep) | hammerhead ribozyme | synthetic construct | Synthetic | Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mg2+ | X-ray diffraction | 2.78 | 2015-10-07 | ||
| 2 | 5DI4|1|A | RNA (48-MER) | synthetic construct | Synthetic | Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at low pH | X-ray diffraction | 2.95 | 2015-10-07 | ||
| 3 | 5DH7|1|A | RNA (48-MER), 5'-R(*GP*GP*GP*CP*GP*UP*DC*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3' | synthetic construct | Synthetic | Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+ | X-ray diffraction | 3.06 | 2015-10-07 | ||
| 4 | 5DQK|1|A | RNA (48-MER) | synthetic construct | Synthetic | Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mg2+ | X-ray diffraction | 2.71 | 2015-10-07 | ||
| 5 | 5EAO|1|A | RNA (48-MER), RNA (5'-R(*GP*GP*GP*CP*GP*U*(CVC)*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3') | synthetic construct | Synthetic | Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+ | X-ray diffraction | 2.99 | 2016-02-24 | ||
| 6 | 5DI2|1|A | RNA (48-MER) | synthetic construct | Synthetic | Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at high pH | X-ray diffraction | 2.99 | 2015-10-07 | ||
| 7 | 5DH8|1|A | RNA (48-MER) | synthetic construct | Synthetic | Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction- G12A mutant in Zn2+ | X-ray diffraction | 3.3 | 2015-10-07 | ||
| 8 | 5EAQ|1|A | RNA (48-MER), RNA (5'-R(*GP*GP*GP*CP*GP*U*(CVC)*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3') | synthetic construct | Synthetic | Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+ | X-ray diffraction | 3.2 | 2016-02-24 |
Release history
| Release | 8.0 | 7.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5DH8|1|A | Title: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction- G12A mutant in Zn2+ | X-RAY DIFFRACTION | 3.3 | 48 | ||
| 2 | 5DH6|1|A | Title: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mg2+ | X-RAY DIFFRACTION | 2.78 | 48 | ||
| 3 | 5DH7|1|A | Title: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+ | X-RAY DIFFRACTION | 3.06 | 48 | ||
| 4 | 5DI2|1|A | Title: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at high pH | X-RAY DIFFRACTION | 2.99 | 48 | ||
| 5 | 5DQK|1|A | Title: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mg2+ | X-RAY DIFFRACTION | 2.71 | 48 | ||
| 6 | 5DI4|1|A | Title: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at low pH | X-RAY DIFFRACTION | 2.95 | 48 | ||
| 7 | 5EAO|1|A | Title: Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+ | X-RAY DIFFRACTION | 2.99 | 48 | ||
| 8 | 5EAQ|1|A | Title: Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+ | X-RAY DIFFRACTION | 3.2 | 48 |
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