Equivalence class NR_4.0_89165.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4U3L|1|A+ 4U3L|1|B (rep) | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Synthetic | octameric RNA duplex co-crystallized in calcium(II)chloride | X-ray diffraction | 1.48 | 2015-07-29 | ||
| 2 | 4U3O|1|A+ 4U3O|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Synthetic | Octameric RNA duplex soaked in manganese(II)chloride | X-ray diffraction | 1.8 | 2015-07-29 | ||
| 3 | 4U3R|1|A+ 4U3R|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Synthetic | Octameric RNA duplex co-crystallized with cobalt(II)chloride | X-ray diffraction | 1.7 | 2015-07-29 | ||
| 4 | 4U78|1|A+ 4U78|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Synthetic | Octameric RNA duplex soaked in copper(II)chloride | X-ray diffraction | 1.5 | 2015-08-26 | ||
| 5 | 4U47|1|A+ 4U47|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Synthetic | Octameric RNA duplex soaked in terbium(III)chloride | X-ray diffraction | 1.95 | 2015-08-05 | ||
| 6 | 4U3P|1|A+ 4U3P|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Synthetic | Octameric RNA duplex co-crystallized with strontium(II)chloride | X-ray diffraction | 1.87 | 2015-07-29 |
Release history
| Release | 8.0 | 7.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_89165.1 | NR_4.0_89165.1 | 8.0 | (6) 4U3L|1|A+4U3L|1|B, 4U3O|1|A+4U3O|1|B, 4U3P|1|A+4U3P|1|B, 4U3R|1|A+4U3R|1|B, 4U47|1|A+4U47|1|B, 4U78|1|A+4U78|1|B | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4U3P|1|A+4U3P|1|B | Title: Octameric RNA duplex co-crystallized with strontium(II)chloride | X-RAY DIFFRACTION | 1.87 | 8 | ||
| 2 | 4U3R|1|A+4U3R|1|B | Title: Octameric RNA duplex co-crystallized with cobalt(II)chloride | X-RAY DIFFRACTION | 1.7 | 8 | ||
| 3 | 4U78|1|A+4U78|1|B | Title: Octameric RNA duplex soaked in copper(II)chloride | X-RAY DIFFRACTION | 1.5 | 8 | ||
| 4 | 4U47|1|A+4U47|1|B | Title: Octameric RNA duplex soaked in terbium(III)chloride | X-RAY DIFFRACTION | 1.95 | 8 | ||
| 5 | 4U3L|1|A+4U3L|1|B | Title: octameric RNA duplex co-crystallized in calcium(II)chloride | X-RAY DIFFRACTION | 1.48 | 8 | ||
| 6 | 4U3O|1|A+4U3O|1|B | Title: Octameric RNA duplex soaked in manganese(II)chloride | X-RAY DIFFRACTION | 1.8 | 8 |
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