Equivalence class NR_4.0_85712.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2A04|1|A+ 2A04|1|C+ 2A04|1|B+ 2A04|1|D (rep) | 5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3' | Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative | X-ray diffraction | 2.95 | 2005-09-20 | ||||
| 2 | 1ZZ5|1|A+ 1ZZ5|1|C+ 1ZZ5|1|B+ 1ZZ5|1|D | 5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3' | Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative | X-ray diffraction | 3 | 2005-09-20 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_85712.1 | NR_all_28066.1 | 5.0 | (2) 1ZZ5|1|A+1ZZ5|1|C+1ZZ5|1|B+1ZZ5|1|D, 2A04|1|A+2A04|1|C+2A04|1|B+2A04|1|D | (0) | (2) 1ZX7|1|C+1ZX7|1|E+1ZX7|1|D+1ZX7|1|F, 1ZX7|1|A+1ZX7|1|G+1ZX7|1|B+1ZX7|1|H |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_85712.1 | NR_4.0_07098.1 | 6.0 | (1) 2A04|1|A+2A04|1|C+2A04|1|B+2A04|1|D | (1) 1ZZ5|1|A+1ZZ5|1|C+1ZZ5|1|B+1ZZ5|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2A04|1|A+2A04|1|C+2A04|1|B+2A04|1|D | Title: Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative | X-RAY DIFFRACTION | 2.95 | 15 | ||
| 2 | 1ZZ5|1|A+1ZZ5|1|C+1ZZ5|1|B+1ZZ5|1|D | Title: Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative | X-RAY DIFFRACTION | 3 | 15 |
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