NR_4.0_84769.1

Members (14)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	2GDI\|1\|Y (rep)	TPP riboswitch (THI element)	TPP riboswitch			RF00059	Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate	X-ray diffraction	2.05	2006-07-04
2	4NYA\|1\|A	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine	X-ray diffraction	2.65	2014-06-04
3	2GDI\|1\|X	TPP riboswitch (THI element)	TPP riboswitch			RF00059	Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate	X-ray diffraction	2.05	2006-07-04
4	2HOJ\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions	X-ray diffraction	2.5	2006-09-19
5	4NYB\|1\|A	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine	X-ray diffraction	3.1	2014-06-04
6	2HOK\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ions	X-ray diffraction	3.2	2006-09-19
7	4NYD\|1\|A	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine	X-ray diffraction	2.9	2014-06-04
8	2HOL\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions	X-ray diffraction	2.9	2006-09-19
9	4NYC\|1\|A	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine	X-ray diffraction	3.15	2014-06-04
10	2HOM\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate	X-ray diffraction	2.89	2006-09-19
11	2HOO\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine	X-ray diffraction	3	2006-09-19
12	4NYA\|1\|B	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine	X-ray diffraction	2.65	2014-06-04
13	4NYG\|1\|A	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with thiamine	X-ray diffraction	3.05	2014-06-04
14	2HOP\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine	X-ray diffraction	3.3	2006-09-19

Release history

Release	2.0	3.0	4.0	5.0
Date	2014-12-05	2016-07-25	2016-07-25	2016-07-25

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_84769.1	NR_4.0_91371.1	6.0	(2) 2GDI\|1\|Y, 2GDI\|1\|X	(12) 2HOJ\|1\|A, 2HOP\|1\|A, 4NYC\|1\|A, 2HOL\|1\|A, 4NYA\|1\|B, 4NYG\|1\|A, 2HOO\|1\|A, 4NYA\|1\|A, 4NYB\|1\|A, 2HOK\|1\|A, 4NYD\|1\|A, 2HOM\|1\|A	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4NYG\|1\|A	Title: Crystal structure of the E. coli thiM riboswitch in complex with thiamine	X-RAY DIFFRACTION	3.05	78
2	2HOP\|1\|A	Title: Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine	X-RAY DIFFRACTION	3.3	76
3	2HOO\|1\|A	Title: Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine	X-RAY DIFFRACTION	3	83
4	4NYD\|1\|A	Title: Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine	X-RAY DIFFRACTION	2.9	79
5	4NYB\|1\|A	Title: Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine	X-RAY DIFFRACTION	3.1	79
6	4NYC\|1\|A	Title: Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine	X-RAY DIFFRACTION	3.15	79
7	2HOK\|1\|A	Title: Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ions	X-RAY DIFFRACTION	3.2	78
8	2HOM\|1\|A	Title: Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate	X-RAY DIFFRACTION	2.89	80
9	2HOL\|1\|A	Title: Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions	X-RAY DIFFRACTION	2.9	79
10	2HOJ\|1\|A	Title: Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions	X-RAY DIFFRACTION	2.5	78
11	2GDI\|1\|X	Title: Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate	X-RAY DIFFRACTION	2.05	78
12	4NYA\|1\|A	Title: Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine	X-RAY DIFFRACTION	2.65	78
13	4NYA\|1\|B	Title: Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine	X-RAY DIFFRACTION	2.65	78
14	2GDI\|1\|Y	Title: Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate	X-RAY DIFFRACTION	2.05	78

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_84769.1 Obsolete

Release history

Parents

Children