Equivalence class NR_4.0_81824.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2GDI|1|X (rep) | TPP riboswitch (THI element) | TPP riboswitch | RF00059 | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-ray diffraction | 2.05 | 2006-07-04 | ||
| 2 | 2GDI|1|Y | TPP riboswitch (THI element) | TPP riboswitch | RF00059 | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-ray diffraction | 2.05 | 2006-07-04 | ||
| 3 | 4NYA|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine | X-ray diffraction | 2.65 | 2014-06-04 |
| 4 | 2HOJ|1|A | TPP riboswitch (THI element) | thi-box riboswitch | RF00059 | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions | X-ray diffraction | 2.5 | 2006-09-19 | ||
| 5 | 2HOM|1|A | TPP riboswitch (THI element) | thi-box riboswitch | RF00059 | Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate | X-ray diffraction | 2.89 | 2006-09-19 | ||
| 6 | 2HOL|1|A | TPP riboswitch (THI element) | thi-box riboswitch | RF00059 | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions | X-ray diffraction | 2.9 | 2006-09-19 | ||
| 7 | 4NYC|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine | X-ray diffraction | 3.15 | 2014-06-04 |
| 8 | 4NYD|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine | X-ray diffraction | 2.9 | 2014-06-04 |
| 9 | 4NYA|1|B | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine | X-ray diffraction | 2.65 | 2014-06-04 |
| 10 | 4NYB|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine | X-ray diffraction | 3.1 | 2014-06-04 |
| 11 | 2HOO|1|A | TPP riboswitch (THI element) | thi-box riboswitch | RF00059 | Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine | X-ray diffraction | 3 | 2006-09-19 | ||
| 12 | 2HOK|1|A | TPP riboswitch (THI element) | thi-box riboswitch | RF00059 | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ions | X-ray diffraction | 3.2 | 2006-09-19 | ||
| 13 | 4NYG|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with thiamine | X-ray diffraction | 3.05 | 2014-06-04 |
| 14 | 2HOP|1|A | TPP riboswitch (THI element) | thi-box riboswitch | RF00059 | Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine | X-ray diffraction | 3.3 | 2006-09-19 |
Release history
| Release | 8.0 | 7.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4NYG|1|A | Title: Crystal structure of the E. coli thiM riboswitch in complex with thiamine | X-RAY DIFFRACTION | 3.05 | 78 | ||
| 2 | 2HOP|1|A | Title: Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine | X-RAY DIFFRACTION | 3.3 | 76 | ||
| 3 | 2HOO|1|A | Title: Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine | X-RAY DIFFRACTION | 3 | 83 | ||
| 4 | 4NYD|1|A | Title: Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine | X-RAY DIFFRACTION | 2.9 | 79 | ||
| 5 | 4NYB|1|A | Title: Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine | X-RAY DIFFRACTION | 3.1 | 79 | ||
| 6 | 4NYC|1|A | Title: Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine | X-RAY DIFFRACTION | 3.15 | 79 | ||
| 7 | 2HOK|1|A | Title: Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ions | X-RAY DIFFRACTION | 3.2 | 78 | ||
| 8 | 2HOM|1|A | Title: Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate | X-RAY DIFFRACTION | 2.89 | 80 | ||
| 9 | 2HOL|1|A | Title: Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions | X-RAY DIFFRACTION | 2.9 | 79 | ||
| 10 | 2HOJ|1|A | Title: Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions | X-RAY DIFFRACTION | 2.5 | 78 | ||
| 11 | 2GDI|1|X | Title: Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-RAY DIFFRACTION | 2.05 | 78 | ||
| 12 | 4NYA|1|A | Title: Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine | X-RAY DIFFRACTION | 2.65 | 78 | ||
| 13 | 4NYA|1|B | Title: Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine | X-RAY DIFFRACTION | 2.65 | 78 | ||
| 14 | 2GDI|1|Y | Title: Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-RAY DIFFRACTION | 2.05 | 78 |
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