Equivalence class NR_4.0_75486.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3OXE|1|A (rep) | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | crystal structure of glycine riboswitch, Mn2+ soaked | X-ray diffraction | 2.9 | 2010-12-29 | ||
| 2 | 3OXB|1|A | Glycine riboswitch | Domain II of glycine riboswitch | RF00504 | Crystal structure of glycine riboswitch with single mutation | X-ray diffraction | 2.95 | 2010-12-29 | ||
| 3 | 3OXB|1|B | Glycine riboswitch | Domain II of glycine riboswitch | RF00504 | Crystal structure of glycine riboswitch with single mutation | X-ray diffraction | 2.95 | 2010-12-29 | ||
| 4 | 3OXE|1|B | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | crystal structure of glycine riboswitch, Mn2+ soaked | X-ray diffraction | 2.9 | 2010-12-29 | ||
| 5 | 3OXD|1|A | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | Crystal structure of glycine riboswitch with two mutations | X-ray diffraction | 3 | 2010-12-29 | ||
| 6 | 3OXD|1|B | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | Crystal structure of glycine riboswitch with two mutations | X-ray diffraction | 3 | 2010-12-29 | ||
| 7 | 3OXM|1|A | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | crystal structure of glycine riboswitch, Tl-Acetate soaked | X-ray diffraction | 2.95 | 2010-12-29 | ||
| 8 | 3OXM|1|B | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | crystal structure of glycine riboswitch, Tl-Acetate soaked | X-ray diffraction | 2.95 | 2010-12-29 | ||
| 9 | 3OWI|1|A | Glycine riboswitch | Domain II of glycine riboswitch | Vibrio cholerae | Bacteria | RF00504 | Crystal structure of the glycine riboswitch bound to glycine | X-ray diffraction | 2.85 | 2010-12-29 |
| 10 | 3OWZ|1|A | Glycine riboswitch | Domain II of glycine riboswitch | RF00504 | Crystal structure of glycine riboswitch, soaked in Iridium | X-ray diffraction | 2.95 | 2010-12-29 | ||
| 11 | 3OWI|1|B | Glycine riboswitch | Domain II of glycine riboswitch | Vibrio cholerae | Bacteria | RF00504 | Crystal structure of the glycine riboswitch bound to glycine | X-ray diffraction | 2.85 | 2010-12-29 |
| 12 | 3OWW|1|A | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | Crystal structure of the glycine riboswitch bound to glycine | X-ray diffraction | 2.8 | 2010-12-29 | ||
| 13 | 3OWW|1|B | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | Crystal structure of the glycine riboswitch bound to glycine | X-ray diffraction | 2.8 | 2010-12-29 | ||
| 14 | 3OX0|1|A | Glycine riboswitch | Domain II of glycine riboswitch | RF00504 | Crystal structure of glycine riboswitch, unbound state | X-ray diffraction | 3.05 | 2010-12-29 | ||
| 15 | 3OXJ|1|A | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | crystal structure of glycine riboswitch, soaked in Ba2+ | X-ray diffraction | 3.2 | 2010-12-29 | ||
| 16 | 3OX0|1|B | Glycine riboswitch | Domain II of glycine riboswitch | RF00504 | Crystal structure of glycine riboswitch, unbound state | X-ray diffraction | 3.05 | 2010-12-29 | ||
| 17 | 3OXJ|1|B | Glycine riboswitch | domain II of glycine riboswitch | RF00504 | crystal structure of glycine riboswitch, soaked in Ba2+ | X-ray diffraction | 3.2 | 2010-12-29 | ||
| 18 | 3OWZ|1|B | Glycine riboswitch | Domain II of glycine riboswitch | RF00504 | Crystal structure of glycine riboswitch, soaked in Iridium | X-ray diffraction | 2.95 | 2010-12-29 |
Release history
| Release | 8.0 | 7.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_75486.1 | NR_4.0_75486.1 | 8.0 | (18) 3OWI|1|A, 3OXM|1|A, 3OXJ|1|B, 3OXJ|1|A, 3OXE|1|B, 3OXE|1|A, 3OXD|1|B, 3OXD|1|A, 3OXB|1|B, 3OXB|1|A, 3OX0|1|B, 3OX0|1|A, 3OWZ|1|B, 3OWZ|1|A, 3OWW|1|B, 3OWW|1|A, 3OWI|1|B, 3OXM|1|B | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3OXB|1|A | Title: Crystal structure of glycine riboswitch with single mutation | X-RAY DIFFRACTION | 2.95 | 86 | ||
| 2 | 3OX0|1|A | Title: Crystal structure of glycine riboswitch, unbound state | X-RAY DIFFRACTION | 3.05 | 86 | ||
| 3 | 3OXJ|1|A | Title: crystal structure of glycine riboswitch, soaked in Ba2+ | X-RAY DIFFRACTION | 3.2 | 86 | ||
| 4 | 3OWI|1|A | Title: Crystal structure of the glycine riboswitch bound to glycine | X-RAY DIFFRACTION | 2.85 | 86 | ||
| 5 | 3OWW|1|A | Title: Crystal structure of the glycine riboswitch bound to glycine | X-RAY DIFFRACTION | 2.8 | 86 | ||
| 6 | 3OXE|1|A | Title: crystal structure of glycine riboswitch, Mn2+ soaked | X-RAY DIFFRACTION | 2.9 | 86 | ||
| 7 | 3OXM|1|A | Title: crystal structure of glycine riboswitch, Tl-Acetate soaked | X-RAY DIFFRACTION | 2.95 | 86 | ||
| 8 | 3OXD|1|A | Title: Crystal structure of glycine riboswitch with two mutations | X-RAY DIFFRACTION | 3 | 86 | ||
| 9 | 3OWZ|1|B | Title: Crystal structure of glycine riboswitch, soaked in Iridium | X-RAY DIFFRACTION | 2.95 | 82 | ||
| 10 | 3OX0|1|B | Title: Crystal structure of glycine riboswitch, unbound state | X-RAY DIFFRACTION | 3.05 | 87 | ||
| 11 | 3OXM|1|B | Title: crystal structure of glycine riboswitch, Tl-Acetate soaked | X-RAY DIFFRACTION | 2.95 | 87 | ||
| 12 | 3OXJ|1|B | Title: crystal structure of glycine riboswitch, soaked in Ba2+ | X-RAY DIFFRACTION | 3.2 | 85 | ||
| 13 | 3OXD|1|B | Title: Crystal structure of glycine riboswitch with two mutations | X-RAY DIFFRACTION | 3 | 86 | ||
| 14 | 3OXB|1|B | Title: Crystal structure of glycine riboswitch with single mutation | X-RAY DIFFRACTION | 2.95 | 86 | ||
| 15 | 3OWW|1|B | Title: Crystal structure of the glycine riboswitch bound to glycine | X-RAY DIFFRACTION | 2.8 | 86 | ||
| 16 | 3OXE|1|B | Title: crystal structure of glycine riboswitch, Mn2+ soaked | X-RAY DIFFRACTION | 2.9 | 87 | ||
| 17 | 3OWI|1|B | Title: Crystal structure of the glycine riboswitch bound to glycine | X-RAY DIFFRACTION | 2.85 | 87 | ||
| 18 | 3OWZ|1|A | Title: Crystal structure of glycine riboswitch, soaked in Iridium | X-RAY DIFFRACTION | 2.95 | 86 |
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