Equivalence class NR_4.0_71450.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WZJ|1|YYYY (rep) | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Eukarya | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | ||
| 2 | 4WZJ|1|XXXX | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Eukarya | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | ||
| 3 | 4WZJ|1|VVVV | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Eukarya | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | ||
| 4 | 4V5U|1|AX | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 5 | 4V5U|1|AY | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 6 | 4V5U|1|BY | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 7 | 4V5U|1|DV | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 8 | 4V5U|1|BV | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 9 | 4V5U|1|CX | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 10 | 4V5U|1|BX | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 11 | 4V5U|1|CV | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 12 | 4V5U|1|CY | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 13 | 4V5U|1|DY | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 14 | 4V5U|1|AV | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 | ||||
| 15 | 4V5U|1|DX | HOMO SAPIENS U4A SNRNA | Structure of the spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2014-07-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_71450.1 | NR_4.0_85242.1 | 9.16 | (3) 4WZJ|1|XXXX, 4WZJ|1|YYYY, 4WZJ|1|VVVV | (12) 4V5U|1|AV, 4V5U|1|BX, 4V5U|1|BY, 4V5U|1|DV, 4V5U|1|AY, 4V5U|1|CV, 4V5U|1|CX, 4V5U|1|DY, 4V5U|1|CY, 4V5U|1|AX, 4V5U|1|DX, 4V5U|1|BV | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4WZJ|1|XXXX | Title: Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 2 | 4WZJ|1|YYYY | Title: Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 3 | 4WZJ|1|VVVV | Title: Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 4 | 4V5U|1|BY | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 5 | 4V5U|1|DY | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 6 | 4V5U|1|AY | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 7 | 4V5U|1|CY | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 8 | 4V5U|1|DX | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 9 | 4V5U|1|BX | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 10 | 4V5U|1|CX | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 11 | 4V5U|1|AX | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 12 | 4V5U|1|BV | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 13 | 4V5U|1|DV | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 14 | 4V5U|1|CV | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 | ||
| 15 | 4V5U|1|AV | Title: Structure of the spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
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