Equivalence class NR_4.0_68908.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4U4U|1|7 (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 2 | 4V88|1|A7 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 3 | 4V88|1|A3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 4 | 4U4U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 5 | 3JCT|1|3 | 5S ribosomal RNA | RDN5-2 rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | Electron microscopy | 3.08 | 2016-06-01 |
| 6 | 5GAK|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | Electron microscopy | 3.88 | 2016-02-24 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_68908.1 | NR_4.0_23249.2 | 6.0 | (6) 4V88|1|A3, 4U4U|1|3, 5GAK|1|3, 4V88|1|A7, 4U4U|1|7, 3JCT|1|3 | (0) | (44) 4U53|1|3, 4U4Z|1|3, 5I4L|1|3, 4U4R|1|3, 4U3U|1|3, 4U52|1|3, 5DC3|1|3, 4U56|1|3, 4U4Q|1|3, 4U50|1|7, 4U4Q|1|7, 5DC3|1|7, 4U4N|1|7, 5I4L|1|7, 4U4Z|1|7, 4U6F|1|7, 4U52|1|7, 4U3U|1|7, 4U4Y|1|3, 4U4N|1|3, 4V7R|1|B2, 4U3N|1|3, 5FCI|1|3, 4U55|1|3, 4U50|1|3, 4U3M|1|3, 4U4O|1|7, 4U3M|1|7, 4U55|1|7, 5FCJ|1|7, 4V7R|1|D2, 4U51|1|7, 4U4R|1|7, 5FCI|1|7, 5FCJ|1|3, 4U4O|1|3, 5APN|1|7, 4U3N|1|7, 4U56|1|7, 5APO|1|7, 4U6F|1|3, 4U53|1|7, 4U51|1|3, 4U4Y|1|7 |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_68908.1 | NR_4.0_56829.1 | 7.0 | (6) 4V88|1|A3, 4U4U|1|3, 5GAK|1|3, 4U4U|1|7, 3JCT|1|3, 4V88|1|A7 | (0) | (44) 4U53|1|3, 4V7R|1|B2, 4V7R|1|D2, 5FCJ|1|7, 4U3U|1|3, 4U4R|1|3, 4U4R|1|7, 4U51|1|3, 4U56|1|3, 4U56|1|7, 5DC3|1|3, 4U3M|1|3, 4U3M|1|7, 4U4O|1|3, 4U4Z|1|3, 4U4Z|1|7, 4U52|1|7, 4U6F|1|7, 5FCJ|1|3, 4U3N|1|7, 4U4Q|1|7, 4U50|1|7, 4U55|1|7, 5APO|1|7, 5I4L|1|7, 4U4N|1|7, 4U4Y|1|7, 4U52|1|3, 4U6F|1|3, 5FCI|1|7, 4U3N|1|3, 4U4Q|1|3, 4U50|1|3, 4U55|1|3, 5APN|1|7, 5I4L|1|3, 4U4N|1|3, 4U4Y|1|3, 4U51|1|7, 5FCI|1|3, 4U4O|1|7, 4U53|1|7, 4U3U|1|7, 5DC3|1|7 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3JCT|1|3 | Title: Cryo-em structure of eukaryotic pre-60S ribosomal subunits | ELECTRON MICROSCOPY | 3.08 | 121 | ||
| 2 | 4V88|1|A3 | Title: The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 121 | ||
| 3 | 4U4U|1|3 | Title: Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | ||
| 4 | 4V88|1|A7 | Title: The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 121 | ||
| 5 | 4U4U|1|7 | Title: Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | ||
| 6 | 5GAK|1|3 | Title: Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | ELECTRON MICROSCOPY | 3.88 | 121 |
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