#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14U4U|1|7 (rep)5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
24U4R|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
34U4Q|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
44U3M|1|75S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
55FCJ|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.12016-05-11
64U4N|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
74U55|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
84U6F|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
94U51|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
104U4R|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
114U3U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
124U3U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
134V88|1|A75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
144V88|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
154U52|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
164U52|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
174U4Z|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
184U50|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
194U3N|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
204U3N|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
215APO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.412015-12-16
224U4U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
234U4Q|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
244U3M|1|35S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
255I4L|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
265I4L|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
275FCJ|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.12016-05-11
284U6F|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
294U4Z|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
304U4N|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
314U55|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
324U51|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
334U4Y|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
345DC3|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
354U53|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
365FCI|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.42016-05-11
374U4Y|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
385DC3|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
394U53|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
404U56|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
414U50|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
424U56|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
434U4O|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
445APN|1|75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.912015-12-16
455FCI|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.42016-05-11
464U4O|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
473JCT|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.082016-06-01
485GAK|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.882016-02-24
494V7R|1|D25S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome.X-ray diffraction42014-07-09
504V7R|1|B25S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome.X-ray diffraction42014-07-09

Release history

Release7.0
Date2017-04-05

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13JCT|1|3Title: Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.08121
25FCI|1|3Title: Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.4121
35DC3|1|3Title: Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
44U4Y|1|3Title: Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
54U4N|1|3Title: Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
64U4U|1|3Title: Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
74U3M|1|3Title: Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
84U3U|1|3Title: Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
94V88|1|A3Title: The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
104U4R|1|3Title: Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
114U52|1|3Title: Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
125FCJ|1|3Title: Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.1121
135I4L|1|3Title: Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
144U4Q|1|3Title: Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
154U50|1|3Title: Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
164U53|1|3Title: Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
174U3N|1|3Title: Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
184U6F|1|3Title: Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
194U4Z|1|3Title: Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
204U55|1|3Title: Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
214U51|1|3Title: Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
224U56|1|3Title: Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
234U4O|1|3Title: Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
245FCI|1|7Title: Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.4121
255FCJ|1|7Title: Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.1121
264U4R|1|7Title: Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
274U3U|1|7Title: Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
284V88|1|A7Title: The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
295I4L|1|7Title: Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
304U4N|1|7Title: Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
314U3M|1|7Title: Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
324U4Y|1|7Title: Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
334U4Z|1|7Title: Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
344U3N|1|7Title: Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
354U55|1|7Title: Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
364U56|1|7Title: Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
374U51|1|7Title: Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
384U50|1|7Title: Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
394U53|1|7Title: Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
404U4Q|1|7Title: Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
414U4U|1|7Title: Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
424U6F|1|7Title: Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
434U52|1|7Title: Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
444U4O|1|7Title: Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
455DC3|1|7Title: Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
465APN|1|7Title: Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.91121
475APO|1|7Title: Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.41121
485GAK|1|3Title: Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.88121
494V7R|1|B2Title: Yeast 80S ribosome.X-RAY DIFFRACTION4121
504V7R|1|D2Title: Yeast 80S ribosome.X-RAY DIFFRACTION4121

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