Equivalence class NR_4.0_67025.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1NYI|1|B+ 1NYI|1|A (rep) | 5'-R(P*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3', 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*AP*GP*UP*CP*AP*CP*CP*AP*C)-3' | Crosslinked Hammerhead Ribozyme Initial State | X-ray diffraction | 2.85 | 2004-02-24 | ||||
| 2 | 359D|1|B+ 359D|1|A | RNA HAMMERHEAD RIBOZYME | INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) | X-ray diffraction | 2.9 | 1997-11-07 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_67025.1 | NR_4.0_29141.1 | 6.0 | (1) 359D|1|B+359D|1|A | (1) 1NYI|1|B+1NYI|1|A | (7) 300D|1|B+300D|1|A, 299D|1|B+299D|1|A, 488D|1|D+488D|1|B+488D|1|A+488D|1|C, 1MME|1|D+1MME|1|C, 379D|1|B+379D|1|A, 1MME|1|B+1MME|1|A, 301D|1|B+301D|1|A |
| NR_4.0_67025.1 | NR_4.0_34176.1 | 6.0 | (1) 1NYI|1|B+1NYI|1|A | (1) 359D|1|B+359D|1|A | (1) 1Q29|1|B+1Q29|1|A |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_67025.1 | NR_4.0_35278.1 | 7.0 | (2) 1NYI|1|B+1NYI|1|A, 359D|1|B+359D|1|A | (0) | (8) 1MME|1|B+1MME|1|A, 488D|1|D+488D|1|B+488D|1|A+488D|1|C, 379D|1|B+379D|1|A, 301D|1|B+301D|1|A, 300D|1|B+300D|1|A, 299D|1|B+299D|1|A, 1Q29|1|B+1Q29|1|A, 1MME|1|D+1MME|1|C |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1NYI|1|B+1NYI|1|A | Title: Crosslinked Hammerhead Ribozyme Initial State | X-RAY DIFFRACTION | 2.85 | 24 | ||
| 2 | 359D|1|B+359D|1|A | Title: INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) | X-RAY DIFFRACTION | 2.9 | 25 |
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