Equivalence class NR_4.0_35278.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 359D|1|B+ 359D|1|A (rep) | RNA HAMMERHEAD RIBOZYME | INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) | X-ray diffraction | 2.9 | 1997-11-07 | ||||
| 2 | 301D|1|B+ 301D|1|A | RNA HAMMERHEAD RIBOZYME | CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKED | X-ray diffraction | 3 | 1997-01-24 | ||||
| 3 | 1MME|1|D+ 1MME|1|C | RNA HAMMERHEAD RIBOZYME | THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | X-ray diffraction | 3.1 | 1996-02-06 | ||||
| 4 | 299D|1|B+ 299D|1|A | RNA HAMMERHEAD RIBOZYME | CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME | X-ray diffraction | 3 | 1997-01-24 | ||||
| 5 | 1MME|1|B+ 1MME|1|A | RNA HAMMERHEAD RIBOZYME | THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | X-ray diffraction | 3.1 | 1996-02-06 | ||||
| 6 | 300D|1|B+ 300D|1|A | RNA HAMMERHEAD RIBOZYME | CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED | X-ray diffraction | 3 | 1997-01-24 | ||||
| 7 | 1NYI|1|B+ 1NYI|1|A | 5'-R(P*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3', 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*AP*GP*UP*CP*AP*CP*CP*AP*C)-3' | Crosslinked Hammerhead Ribozyme Initial State | X-ray diffraction | 2.85 | 2004-02-24 | ||||
| 8 | 1Q29|1|B+ 1Q29|1|A | 5'-R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3', Ribozyme | Hammerhead Ribozyme with 5'-5' G-G linkage: Conformational change experiment | X-ray diffraction | 3 | 2004-02-24 | ||||
| 9 | 488D|1|D+ 488D|1|B+ 488D|1|A+ 488D|1|C | RNA RIBOZYME STRAND, FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE, SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE, UNCLEAVED RNA SUBSTRATE | CATALYTIC RNA ENZYME-PRODUCT COMPLEX | X-ray diffraction | 3.1 | 2000-03-06 | ||||
| 10 | 379D|1|B+ 379D|1|A | RNA (5'-R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*A P*GP*UP*CP*AP*CP*CP*AP*C)-3') | THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE | X-ray diffraction | 3.1 | 1998-02-11 |
Release history
| Release | 8.0 | 7.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_35278.1 | NR_4.0_35278.1 | 8.0 | (10) 1MME|1|B+1MME|1|A, 379D|1|B+379D|1|A, 359D|1|B+359D|1|A, 301D|1|B+301D|1|A, 300D|1|B+300D|1|A, 299D|1|B+299D|1|A, 1Q29|1|B+1Q29|1|A, 1NYI|1|B+1NYI|1|A, 1MME|1|D+1MME|1|C, 488D|1|D+488D|1|B+488D|1|A+488D|1|C | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1NYI|1|B+1NYI|1|A | Title: Crosslinked Hammerhead Ribozyme Initial State | X-RAY DIFFRACTION | 2.85 | 24 | ||
| 2 | 1MME|1|D+1MME|1|C | Title: THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | X-RAY DIFFRACTION | 3.1 | 25 | ||
| 3 | 301D|1|B+301D|1|A | Title: CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKED | X-RAY DIFFRACTION | 3 | 25 | ||
| 4 | 1MME|1|B+1MME|1|A | Title: THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | X-RAY DIFFRACTION | 3.1 | 25 | ||
| 5 | 359D|1|B+359D|1|A | Title: INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) | X-RAY DIFFRACTION | 2.9 | 25 | ||
| 6 | 299D|1|B+299D|1|A | Title: CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME | X-RAY DIFFRACTION | 3 | 25 | ||
| 7 | 300D|1|B+300D|1|A | Title: CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED | X-RAY DIFFRACTION | 3 | 25 | ||
| 8 | 488D|1|D+488D|1|B+488D|1|A+488D|1|C | Title: CATALYTIC RNA ENZYME-PRODUCT COMPLEX | X-RAY DIFFRACTION | 3.1 | 25 | ||
| 9 | 379D|1|B+379D|1|A | Title: THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE | X-RAY DIFFRACTION | 3.1 | 25 | ||
| 10 | 1Q29|1|B+1Q29|1|A | Title: Hammerhead Ribozyme with 5'-5' G-G linkage: Conformational change experiment | X-RAY DIFFRACTION | 3 | 24 |
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