Equivalence class NR_4.0_64693.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5GIP|1|G+ 5GIP|1|H+ 5GIP|1|I+ 5GIP|1|J (rep) | C/D RNA, substrate | Saccharolobus solfataricus | Archaea | Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates | X-ray diffraction | 3.13 | 2016-09-14 | ||
| 2 | 5GIP|1|Q+ 5GIP|1|R+ 5GIP|1|S+ 5GIP|1|T | C/D RNA, substrate | Saccharolobus solfataricus | Archaea | Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates | X-ray diffraction | 3.13 | 2016-09-14 | ||
| 3 | 3PLA|1|G+ 3PLA|1|H+ 3PLA|1|I+ 3PLA|1|J | C/D guide RNA, RNA (5'-R(*CP*CP*AP*UP*GP*AP*GP*UP*GP*U)-3') | synthetic construct | Synthetic | Crystal structure of a catalytically active substrate-bound box C/D RNP from Sulfolobus solfataricus | X-ray diffraction | 3.15 | 2011-01-26 | ||
| 4 | 3PLA|1|N+ 3PLA|1|O | C/D guide RNA, RNA (5'-R(*CP*CP*AP*UP*GP*AP*GP*UP*GP*U)-3') | synthetic construct | Synthetic | Crystal structure of a catalytically active substrate-bound box C/D RNP from Sulfolobus solfataricus | X-ray diffraction | 3.15 | 2011-01-26 | ||
| 5 | 5GIN|1|G+ 5GIN|1|H+ 5GIN|1|I+ 5GIN|1|J | C/D RNA, substrate | Saccharolobus solfataricus | Archaea | Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates | X-ray diffraction | 3.31 | 2016-09-14 | ||
| 6 | 5GIO|1|G+ 5GIO|1|H+ 5GIO|1|I+ 5GIO|1|J | C/D RNA, substrate | Saccharolobus solfataricus | Archaea | Crystal structure of box C/D RNP with 12 nt guide regions and 13 nt substrates | X-ray diffraction | 3.6 | 2016-09-14 | ||
| 7 | 5GIN|1|N+ 5GIN|1|O | C/D RNA, substrate | Saccharolobus solfataricus | Archaea | Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates | X-ray diffraction | 3.31 | 2016-09-14 | ||
| 8 | 5GIO|1|N+ 5GIO|1|O | C/D RNA, substrate | Saccharolobus solfataricus | Archaea | Crystal structure of box C/D RNP with 12 nt guide regions and 13 nt substrates | X-ray diffraction | 3.6 | 2016-09-14 |
Release history
| Release | 8.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_64693.1 | NR_4.0_36880.1 | 8.0 | (2) 3PLA|1|G+3PLA|1|H+3PLA|1|I+3PLA|1|J, 3PLA|1|N+3PLA|1|O | (6) 5GIO|1|G+5GIO|1|H+5GIO|1|I+5GIO|1|J, 5GIN|1|N+5GIN|1|O, 5GIN|1|G+5GIN|1|H+5GIN|1|I+5GIN|1|J, 5GIP|1|Q+5GIP|1|R+5GIP|1|S+5GIP|1|T, 5GIP|1|G+5GIP|1|H+5GIP|1|I+5GIP|1|J, 5GIO|1|N+5GIO|1|O | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5GIN|1|N+5GIN|1|O | Title: Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates | X-RAY DIFFRACTION | 3.31 | 31 | ||
| 2 | 5GIO|1|N+5GIO|1|O | Title: Crystal structure of box C/D RNP with 12 nt guide regions and 13 nt substrates | X-RAY DIFFRACTION | 3.6 | 31 | ||
| 3 | 3PLA|1|N+3PLA|1|O | Title: Crystal structure of a catalytically active substrate-bound box C/D RNP from Sulfolobus solfataricus | X-RAY DIFFRACTION | 3.15 | 31 | ||
| 4 | 3PLA|1|G+3PLA|1|H+3PLA|1|I+3PLA|1|J | Title: Crystal structure of a catalytically active substrate-bound box C/D RNP from Sulfolobus solfataricus | X-RAY DIFFRACTION | 3.15 | 35 | ||
| 5 | 5GIO|1|G+5GIO|1|H+5GIO|1|I+5GIO|1|J | Title: Crystal structure of box C/D RNP with 12 nt guide regions and 13 nt substrates | X-RAY DIFFRACTION | 3.6 | 35 | ||
| 6 | 5GIN|1|G+5GIN|1|H+5GIN|1|I+5GIN|1|J | Title: Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates | X-RAY DIFFRACTION | 3.31 | 35 | ||
| 7 | 5GIP|1|Q+5GIP|1|R+5GIP|1|S+5GIP|1|T | Title: Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates | X-RAY DIFFRACTION | 3.13 | 31 | ||
| 8 | 5GIP|1|G+5GIP|1|H+5GIP|1|I+5GIP|1|J | Title: Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates | X-RAY DIFFRACTION | 3.13 | 31 |
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