Equivalence class NR_4.0_64115.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3B5S|1|B+ 3B5S|1|C+ 3B5S|1|A (rep) | Loop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strand | Minimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active Site | X-ray diffraction | 2.25 | 2008-08-12 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_64115.1 | NR_4.0_36660.1 | 6.0 | (1) 3B5S|1|B+3B5S|1|C+3B5S|1|A | (0) | (9) 3B58|1|B+3B58|1|C+3B58|1|A, 3B5A|1|B+3B5A|1|C+3B5A|1|A, 3B5F|1|B+3B5F|1|C+3B5F|1|A, 3B91|1|B+3B91|1|C+3B91|1|A, 3BBI|1|B+3BBI|1|C+3BBI|1|A, 3BBK|1|B+3BBK|1|C+3BBK|1|A, 3BBM|1|B+3BBM|1|C+3BBM|1|A, 4G6P|1|B+4G6P|1|C+4G6P|1|A, 4G6S|1|B+4G6S|1|C+4G6S|1|A |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_64115.1 | NR_4.0_38897.1 | 7.0 | (1) 3B5S|1|B+3B5S|1|C+3B5S|1|A | (0) | (9) 3B58|1|B+3B58|1|C+3B58|1|A, 3B5A|1|B+3B5A|1|C+3B5A|1|A, 3B5F|1|B+3B5F|1|C+3B5F|1|A, 3B91|1|B+3B91|1|C+3B91|1|A, 3BBI|1|B+3BBI|1|C+3BBI|1|A, 3BBK|1|B+3BBK|1|C+3BBK|1|A, 3BBM|1|B+3BBM|1|C+3BBM|1|A, 4G6P|1|B+4G6P|1|C+4G6P|1|A, 4G6S|1|B+4G6S|1|C+4G6S|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3B5S|1|B+3B5S|1|C+3B5S|1|A | Title: Minimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active Site | X-RAY DIFFRACTION | 2.25 | 29 |
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