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Equivalence class NR_4.0_38897.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13BBM|1|B+ 3BBM|1|C+ 3BBM|1|A (rep)Loop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active SiteX-ray diffraction2.652008-08-12
23B5S|1|B+ 3B5S|1|C+ 3B5S|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active SiteX-ray diffraction2.252008-08-12
33B5A|1|B+ 3B5A|1|C+ 3B5A|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandCrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active siteX-ray diffraction2.352008-08-12
43BBI|1|B+ 3BBI|1|C+ 3BBI|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active SiteX-ray diffraction2.352008-08-12
53BBK|1|B+ 3BBK|1|C+ 3BBK|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandMiminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active SiteX-ray diffraction2.752008-08-12
63B91|1|B+ 3B91|1|C+ 3B91|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active SiteX-ray diffraction2.752008-08-12
73B5F|1|B+ 3B5F|1|C+ 3B5F|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandCrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active SiteX-ray diffraction2.72008-08-12
83B58|1|B+ 3B58|1|C+ 3B58|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active SiteX-ray diffraction2.652008-08-12
94G6P|1|B+ 4G6P|1|C+ 4G6P|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B of the Ribozyme StrandMinimal Hairpin Ribozyme in the Precatalytic State with A38P VariationX-ray diffraction2.642012-08-15
104G6S|1|B+ 4G6S|1|C+ 4G6S|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B of the Ribozyme StrandMinimal Hairpin Ribozyme in the Transition State with A38P VariationX-ray diffraction2.842012-08-08

Release history

Release8.07.09.09.19.29.39.49.59.69.79.89.99.109.119.129.139.149.159.169.179.189.199.209.219.229.239.24
Date2017-04-052017-04-052017-10-262017-11-072017-12-022017-12-132017-12-212017-12-222018-01-042018-01-052018-01-102018-01-112018-01-122018-01-282018-04-012018-04-012018-09-142018-11-092018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_38897.1NR_4.0_38897.18.0(10) 3B58|1|B+3B58|1|C+3B58|1|A, 4G6P|1|B+4G6P|1|C+4G6P|1|A, 3BBM|1|B+3BBM|1|C+3BBM|1|A, 3BBK|1|B+3BBK|1|C+3BBK|1|A, 3BBI|1|B+3BBI|1|C+3BBI|1|A, 3B91|1|B+3B91|1|C+3B91|1|A, 3B5S|1|B+3B5S|1|C+3B5S|1|A, 3B5F|1|B+3B5F|1|C+3B5F|1|A, 3B5A|1|B+3B5A|1|C+3B5A|1|A, 4G6S|1|B+4G6S|1|C+4G6S|1|A(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13B5F|1|B+3B5F|1|C+3B5F|1|ATitle: Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active SiteX-RAY DIFFRACTION2.729
23B5A|1|B+3B5A|1|C+3B5A|1|ATitle: Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active siteX-RAY DIFFRACTION2.3529
33BBI|1|B+3BBI|1|C+3BBI|1|ATitle: Minimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active SiteX-RAY DIFFRACTION2.3529
43B5S|1|B+3B5S|1|C+3B5S|1|ATitle: Minimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active SiteX-RAY DIFFRACTION2.2529
54G6P|1|B+4G6P|1|C+4G6P|1|ATitle: Minimal Hairpin Ribozyme in the Precatalytic State with A38P VariationX-RAY DIFFRACTION2.6429
63BBM|1|B+3BBM|1|C+3BBM|1|ATitle: Minimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active SiteX-RAY DIFFRACTION2.6529
73B91|1|B+3B91|1|C+3B91|1|ATitle: Minimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active SiteX-RAY DIFFRACTION2.7529
84G6S|1|B+4G6S|1|C+4G6S|1|ATitle: Minimal Hairpin Ribozyme in the Transition State with A38P VariationX-RAY DIFFRACTION2.8429
93B58|1|B+3B58|1|C+3B58|1|ATitle: Minimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active SiteX-RAY DIFFRACTION2.6529
103BBK|1|B+3BBK|1|C+3BBK|1|ATitle: Miminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active SiteX-RAY DIFFRACTION2.7529

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