Equivalence class NR_4.0_62422.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2PWT|1|A+ 2PWT|1|B (rep) | 22-mer of the ribosomal decoding site | Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | X-ray diffraction | 1.8 | 2007-09-18 | ||||
| 2 | 3S4P|1|A+ 3S4P|1|B | RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue | X-ray diffraction | 2.56 | 2011-09-21 | ||||
| 3 | 4F8V|1|A+ 4F8V|1|B | RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form) | X-ray diffraction | 2.8 | 2012-08-15 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_62422.1 | NR_all_78117.1 | 5.0 | (3) 4F8V|1|A+4F8V|1|B, 3S4P|1|A+3S4P|1|B, 2PWT|1|A+2PWT|1|B | (0) | (6) 3BNN|1|A+3BNN|1|B, 3BNN|1|C+3BNN|1|D, 3BNO|1|A+3BNO|1|B, 3BNO|1|C+3BNO|1|D, 2F4S|1|A+2F4S|1|B, 2F4U|1|A+2F4U|1|B |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_62422.1 | NR_4.0_96165.1 | 6.0 | (1) 2PWT|1|A+2PWT|1|B | (2) 3S4P|1|A+3S4P|1|B, 4F8V|1|A+4F8V|1|B | (3) 1MWL|1|A+1MWL|1|B, 4PDQ|1|A+4PDQ|1|B, 5BWS|1|A+5BWS|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3S4P|1|A+3S4P|1|B | Title: Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue | X-RAY DIFFRACTION | 2.56 | 21 | ||
| 2 | 2PWT|1|A+2PWT|1|B | Title: Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | X-RAY DIFFRACTION | 1.8 | 21 | ||
| 3 | 4F8V|1|A+4F8V|1|B | Title: Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form) | X-RAY DIFFRACTION | 2.8 | 21 |
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