Equivalence class NR_4.0_54582.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6BK8|1|2+ 6BK8|1|6+ 6BK8|1|i (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, RNA (59-MER) | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | S. cerevisiae spliceosomal post-catalytic P complex | Electron microscopy | 3.3 | 2018-02-21 |
| 2 | 6EXN|1|2+ 6EXN|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, Intron lariat: UBC4 RNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Post-catalytic P complex spliceosome with 3' splice site docked | Electron microscopy | 3.7 | 2018-01-17 |
| 3 | 5LJ3|1|Z+ 5LJ3|1|V | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_54582.3 | NR_4.0_54582.2 | 9.12 | (1) 5LJ3|1|Z+5LJ3|1|V | (2) 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6EXN|1|2+6EXN|1|6 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_54582.3 | NR_4.0_54582.4 | 9.15 | (3) 6EXN|1|2+6EXN|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 5LJ3|1|Z+5LJ3|1|V | (0) | (2) 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 6EXN|1|2+6EXN|1|6 | Title: Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 136 | ||
| 2 | 6BK8|1|2+6BK8|1|6+6BK8|1|i | Title: S. cerevisiae spliceosomal post-catalytic P complex | ELECTRON MICROSCOPY | 3.3 | 135 | ||
| 3 | 5LJ3|1|Z+5LJ3|1|V | Title: Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 171 |
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