Equivalence class NR_4.0_48442.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2NZ4|1|Q (rep) | glmS glucosamine-6-phosphate activated ribozyme | GlmS ribozyme, substrate strand RNA 13-mer | RF00234 | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-ray diffraction | 2.5 | 2007-01-16 | ||
| 2 | 2NZ4|1|R | glmS glucosamine-6-phosphate activated ribozyme | GlmS ribozyme, substrate strand RNA 13-mer | RF00234 | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-ray diffraction | 2.5 | 2007-01-16 | ||
| 3 | 3G8T|1|P | glmS glucosamine-6-phosphate activated ribozyme | glmS glucosamine-6-phosphate activated ribozyme, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Synthetic | RF00234 | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-ray diffraction | 3 | 2009-11-03 |
| 4 | 2NZ4|1|P | glmS glucosamine-6-phosphate activated ribozyme | GlmS ribozyme, substrate strand RNA 13-mer | RF00234 | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-ray diffraction | 2.5 | 2007-01-16 | ||
| 5 | 3G8T|1|R | glmS glucosamine-6-phosphate activated ribozyme | glmS glucosamine-6-phosphate activated ribozyme, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Synthetic | RF00234 | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-ray diffraction | 3 | 2009-11-03 |
| 6 | 3G8T|1|Q | glmS glucosamine-6-phosphate activated ribozyme | glmS glucosamine-6-phosphate activated ribozyme, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Synthetic | RF00234 | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-ray diffraction | 3 | 2009-11-03 |
| 7 | 2NZ4|1|S | glmS glucosamine-6-phosphate activated ribozyme | GlmS ribozyme, substrate strand RNA 13-mer | RF00234 | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-ray diffraction | 2.5 | 2007-01-16 | ||
| 8 | 3G8T|1|S | glmS glucosamine-6-phosphate activated ribozyme | glmS glucosamine-6-phosphate activated ribozyme, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Synthetic | RF00234 | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-ray diffraction | 3 | 2009-11-03 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_48442.1 | NR_4.0_04111.1 | 6.0 | (8) 3G8T|1|P, 3G8T|1|R, 2NZ4|1|P, 2NZ4|1|R, 3G8T|1|Q, 3G8T|1|S, 2NZ4|1|Q, 2NZ4|1|S | (0) | (16) 3G9C|1|R, 3G96|1|Q, 3G8S|1|P, 3G9C|1|S, 3G96|1|R, 3G8S|1|Q, 3L3C|1|P, 3G96|1|S, 3G8S|1|R, 3L3C|1|Q, 3G9C|1|P, 3G8S|1|S, 3L3C|1|R, 3G9C|1|Q, 3G96|1|P, 3L3C|1|S |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_48442.1 | NR_4.0_39571.1 | 7.0 | (8) 3G8T|1|P, 3G8T|1|Q, 2NZ4|1|P, 3G8T|1|R, 2NZ4|1|Q, 3G8T|1|S, 2NZ4|1|R, 2NZ4|1|S | (0) | (16) 3G96|1|Q, 3G96|1|P, 3G8S|1|S, 3G8S|1|R, 3G8S|1|Q, 3G8S|1|P, 3L3C|1|S, 3L3C|1|R, 3L3C|1|Q, 3L3C|1|P, 3G9C|1|S, 3G9C|1|R, 3G9C|1|Q, 3G9C|1|P, 3G96|1|S, 3G96|1|R |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3G8T|1|P | Title: Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-RAY DIFFRACTION | 3 | 140 | ||
| 2 | 3G8T|1|S | Title: Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-RAY DIFFRACTION | 3 | 140 | ||
| 3 | 3G8T|1|Q | Title: Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-RAY DIFFRACTION | 3 | 140 | ||
| 4 | 3G8T|1|R | Title: Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-RAY DIFFRACTION | 3 | 140 | ||
| 5 | 2NZ4|1|S | Title: Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-RAY DIFFRACTION | 2.5 | 140 | ||
| 6 | 2NZ4|1|P | Title: Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-RAY DIFFRACTION | 2.5 | 140 | ||
| 7 | 2NZ4|1|R | Title: Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-RAY DIFFRACTION | 2.5 | 140 | ||
| 8 | 2NZ4|1|Q | Title: Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-RAY DIFFRACTION | 2.5 | 140 |
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