Equivalence class NR_4.0_44948.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4OQ9|1|d (rep) | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 2 | 4OQ9|1|c | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 3 | 4OQ9|1|b | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 4 | 4OQ9|1|a | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 5 | 4OQ9|1|Z | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 6 | 4OQ9|1|Y+ 4OQ9|1|n | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 7 | 4OQ9|1|X+ 4OQ9|1|m | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 8 | 4OQ9|1|W | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 9 | 4OQ9|1|V | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 10 | 4OQ9|1|U | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 11 | 4OQ9|1|T+ 4OQ9|1|i | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 12 | 4OQ9|1|S+ 4OQ9|1|h | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 13 | 4OQ9|1|R+ 4OQ9|1|g | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 14 | 4OQ9|1|Q | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 15 | 4OQ9|1|P+ 4OQ9|1|e | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 16 | 1A34|1|B+ 1A34|1|C | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX | X-ray diffraction | 1.81 | 1998-04-29 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_44948.1 | NR_4.0_91503.2 | 6.0 | (16) 4OQ9|1|U, 1A34|1|B+1A34|1|C, 4OQ9|1|a, 4OQ9|1|W, 4OQ9|1|Q, 4OQ9|1|c, 4OQ9|1|Y+4OQ9|1|n, 4OQ9|1|S+4OQ9|1|h, 4OQ9|1|Z, 4OQ9|1|T+4OQ9|1|i, 4OQ9|1|V, 4OQ9|1|P+4OQ9|1|e, 4OQ9|1|X+4OQ9|1|m, 4OQ9|1|R+4OQ9|1|g, 4OQ9|1|b, 4OQ9|1|d | (0) | (16) 4NIA|1|a, 4NIA|1|V, 4NIA|1|W, 4NIA|1|Q, 4NIA|1|R+4NIA|1|g, 4NIA|1|b, 4NIA|1|X+4NIA|1|m, 4NIA|1|S+4NIA|1|h, 4NIA|1|c, 4NIA|1|Y+4NIA|1|n, 4NIA|1|T+4NIA|1|i, 4NIA|1|d, 4NIA|1|Z, 4NIA|1|U, 4NIA|1|P+4NIA|1|e, 4OQ8|1|B+4OQ8|1|C |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_44948.1 | NR_4.0_20087.1 | 7.0 | (16) 4OQ9|1|Z, 4OQ9|1|U, 4OQ9|1|P+4OQ9|1|e, 4OQ9|1|a, 4OQ9|1|V, 4OQ9|1|Q, 4OQ9|1|b, 4OQ9|1|W, 4OQ9|1|R+4OQ9|1|g, 4OQ9|1|c, 4OQ9|1|X+4OQ9|1|m, 4OQ9|1|S+4OQ9|1|h, 4OQ9|1|d, 4OQ9|1|Y+4OQ9|1|n, 4OQ9|1|T+4OQ9|1|i, 1A34|1|B+1A34|1|C | (0) | (16) 4NIA|1|d, 4NIA|1|c, 4NIA|1|b, 4NIA|1|a, 4OQ8|1|B+4OQ8|1|C, 4NIA|1|Z, 4NIA|1|Y+4NIA|1|n, 4NIA|1|X+4NIA|1|m, 4NIA|1|W, 4NIA|1|V, 4NIA|1|U, 4NIA|1|T+4NIA|1|i, 4NIA|1|S+4NIA|1|h, 4NIA|1|R+4NIA|1|g, 4NIA|1|Q, 4NIA|1|P+4NIA|1|e |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1A34|1|B+1A34|1|C | Title: SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX | X-RAY DIFFRACTION | 1.81 | 11 | ||
| 2 | 4OQ9|1|c | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 3 | 4OQ9|1|W | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 4 | 4OQ9|1|U | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 5 | 4OQ9|1|Z | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 6 | 4OQ9|1|b | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 7 | 4OQ9|1|d | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 8 | 4OQ9|1|V | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 9 | 4OQ9|1|R+4OQ9|1|g | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 10 | 4OQ9|1|a | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 11 | 4OQ9|1|Y+4OQ9|1|n | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 12 | 4OQ9|1|Q | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 13 | 4OQ9|1|P+4OQ9|1|e | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 14 | 4OQ9|1|X+4OQ9|1|m | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 15 | 4OQ9|1|T+4OQ9|1|i | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | ||
| 16 | 4OQ9|1|S+4OQ9|1|h | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
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