RNA 3D Hub //

Equivalence class NR_4.0_20087.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14NIA|1|c (rep)RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
24NIA|1|WRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
34NIA|1|aRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
44NIA|1|S+ 4NIA|1|hRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
54NIA|1|Y+ 4NIA|1|nRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
64NIA|1|R+ 4NIA|1|gRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
74NIA|1|dRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
84NIA|1|bRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
94NIA|1|T+ 4NIA|1|iRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
104NIA|1|VRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
114NIA|1|URNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
124NIA|1|P+ 4NIA|1|eRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
134NIA|1|QRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
144NIA|1|X+ 4NIA|1|mRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
154NIA|1|ZRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
161A34|1|B+ 1A34|1|CRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEXX-ray diffraction1.811998-04-29
174OQ9|1|URNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
184OQ9|1|T+ 4OQ9|1|iRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
194OQ9|1|R+ 4OQ9|1|gRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
204OQ9|1|cRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
214OQ9|1|QRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
224OQ9|1|S+ 4OQ9|1|hRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
234OQ9|1|WRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
244OQ9|1|Y+ 4OQ9|1|nRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
254OQ9|1|aRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
264OQ9|1|dRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
274OQ9|1|VRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
284OQ9|1|P+ 4OQ9|1|eRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
294OQ9|1|X+ 4OQ9|1|mRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
304OQ9|1|ZRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
314OQ9|1|bRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
324OQ8|1|B+ 4OQ8|1|CRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraintsX-ray diffraction1.452014-09-10

Release history

Release8.07.09.09.19.29.39.49.59.69.79.89.99.109.119.129.139.149.159.169.179.189.199.209.219.229.239.24
Date2017-04-052017-04-052017-10-262017-11-072017-12-022017-12-132017-12-212017-12-222018-01-042018-01-052018-01-102018-01-112018-01-122018-01-282018-04-012018-04-012018-09-142018-11-092018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_20087.1NR_4.0_20087.18.0(32) 1A34|1|B+1A34|1|C, 4OQ9|1|P+4OQ9|1|e, 4OQ9|1|Q, 4OQ9|1|R+4OQ9|1|g, 4OQ9|1|S+4OQ9|1|h, 4OQ9|1|T+4OQ9|1|i, 4OQ9|1|U, 4OQ9|1|V, 4OQ9|1|W, 4OQ9|1|X+4OQ9|1|m, 4OQ9|1|Y+4OQ9|1|n, 4OQ9|1|Z, 4OQ9|1|a, 4OQ9|1|b, 4OQ9|1|c, 4OQ8|1|B+4OQ8|1|C, 4NIA|1|d, 4NIA|1|P+4NIA|1|e, 4NIA|1|Q, 4NIA|1|R+4NIA|1|g, 4NIA|1|S+4NIA|1|h, 4NIA|1|T+4NIA|1|i, 4NIA|1|U, 4NIA|1|V, 4NIA|1|W, 4NIA|1|X+4NIA|1|m, 4NIA|1|Y+4NIA|1|n, 4NIA|1|Z, 4NIA|1|a, 4NIA|1|b, 4NIA|1|c, 4OQ9|1|d(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14OQ8|1|B+4OQ8|1|CTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraintsX-RAY DIFFRACTION1.4510
24NIA|1|P+4NIA|1|eTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
34NIA|1|T+4NIA|1|iTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
44NIA|1|S+4NIA|1|hTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
54NIA|1|aTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
64NIA|1|UTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
74NIA|1|WTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
84NIA|1|ZTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
94NIA|1|VTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
104NIA|1|Y+4NIA|1|nTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
114NIA|1|R+4NIA|1|gTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
124NIA|1|QTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
134NIA|1|cTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
144OQ9|1|cTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
154OQ9|1|WTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
164OQ9|1|UTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
174OQ9|1|ZTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
184OQ9|1|bTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
194OQ9|1|dTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
204OQ9|1|P+4OQ9|1|eTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
214OQ9|1|X+4OQ9|1|mTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
224OQ9|1|S+4OQ9|1|hTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
234OQ9|1|T+4OQ9|1|iTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
244OQ9|1|aTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
254OQ9|1|R+4OQ9|1|gTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
264OQ9|1|Y+4OQ9|1|nTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
274OQ9|1|VTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
284OQ9|1|QTitle: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4510
294NIA|1|bTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
304NIA|1|dTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
314NIA|1|X+4NIA|1|mTitle: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8210
321A34|1|B+1A34|1|CTitle: SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEXX-RAY DIFFRACTION1.8111

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0211 s