Equivalence class NR_4.0_39428.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V8U|1|CV (rep) | Transfer RNA | MRNA, RNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-ray diffraction | 3.7 | 2014-07-09 |
| 2 | 4V8U|1|AV | Transfer RNA | MRNA, RNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-ray diffraction | 3.7 | 2014-07-09 |
| 3 | 5J8B|1|w | Transfer RNA | A-site tRNA, mRNA | Thermus thermophilus | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.6 | 2016-05-25 |
| 4 | 5J8B|1|y | Transfer RNA | E-site tRNA | Thermus thermophilus | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.6 | 2016-05-25 |
| 5 | 4V90|1|AV | Transfer RNA | RNA (77-MER), 5'-R(*UP*AP*AP*AP*AP*AP*UP*GP*UP)-3' | Thermus thermophilus | Bacteria | RF00005 | Thermus thermophilus Ribosome | X-ray diffraction | 2.95 | 2014-07-09 |
| 6 | 4WT8|1|D3 | Transfer RNA | A site tNA, E site tNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
| 7 | 3J9Z|1|S7 | Transfer RNA | E-tRNA | Thermus thermophilus | Bacteria | RF00005 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | Electron microscopy | 3.6 | 2015-07-01 |
| 8 | 4V5A|1|AV+ 4V5A|1|AX | Transfer RNA | P-SITE RNA ASL-PHE, MRNA | synthetic construct | Synthetic | RF00005 | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-ray diffraction | 3.5 | 2014-07-09 |
| 9 | 4V5A|1|CV+ 4V5A|1|CX | Transfer RNA | P-SITE RNA ASL-PHE, MRNA | synthetic construct | Synthetic | RF00005 | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-ray diffraction | 3.5 | 2014-07-09 |
| 10 | 4WT8|1|C3 | Transfer RNA | A site tNA, E site tNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
| 11 | 4WT8|1|C2 | Transfer RNA | A site tNA, E site tNA, mRNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_39428.1 | NR_4.0_34306.1 | 6.0 | (5) 4WT8|1|C2, 4V8U|1|CV, 4WT8|1|D3, 4V8U|1|AV, 4WT8|1|C3 | (6) 4V90|1|AV, 4V5A|1|CV+4V5A|1|CX, 3J9Z|1|S7, 5J8B|1|y, 4V5A|1|AV+4V5A|1|AX, 5J8B|1|w | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4WT8|1|C2 | Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 75 | ||
| 2 | 4WT8|1|C3 | Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 76 | ||
| 3 | 4WT8|1|D3 | Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 76 | ||
| 4 | 3J9Z|1|S7 | Title: Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 74 | ||
| 5 | 5J8B|1|w | Title: Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.6 | 67 | ||
| 6 | 4V5A|1|CV+4V5A|1|CX | Title: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 17 | ||
| 7 | 4V8U|1|AV | Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 | ||
| 8 | 4V8U|1|CV | Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 | ||
| 9 | 4V5A|1|AV+4V5A|1|AX | Title: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 17 | ||
| 10 | 4V90|1|AV | Title: Thermus thermophilus Ribosome | X-RAY DIFFRACTION | 2.95 | 76 | ||
| 11 | 5J8B|1|y | Title: Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.6 | 68 |
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