Equivalence class NR_4.0_38383.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3I5X|1|B (rep) | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and AMP-PNP | X-ray diffraction | 1.9 | 2009-09-08 | ||||
| 2 | 3I61|1|B | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and ADP-Beryllium Fluoride | X-ray diffraction | 2.1 | 2009-09-08 | ||||
| 3 | 3I62|1|B | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and ADP-Aluminum Fluoride | X-ray diffraction | 1.95 | 2009-09-08 | ||||
| 4 | 3I5Y|1|B | 5'-R(*UP*UP*UP*(5BU)P*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA containing a single 5-BrU and AMP-PNP | X-ray diffraction | 2.49 | 2009-09-08 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_38383.1 | NR_all_04072.1 | 5.0 | (4) 3I61|1|B, 3I5X|1|B, 3I5Y|1|B, 3I62|1|B | (0) | (26) 4OQ9|1|p, 4NIA|1|k, 4NIA|1|s, 4OQ9|1|q, 3FHT|1|D, 4NIA|1|l, 4OQ9|1|f, 4OQ9|1|j, 2DB3|1|E, 3SQW|1|B, 4NIA|1|o, 4NIA|1|p, 2DB3|1|F, 3SQX|1|B, 4NIA|1|f, 2DB3|1|G, 2DB3|1|H, 4OQ9|1|r, 4OQ9|1|s, 4OQ9|1|k, 4OQ9|1|l, 4NIA|1|q, 4NIA|1|r, 4NIA|1|j, 3FHT|1|C, 4OQ9|1|o |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3I61|1|B | Title: Structure of Mss116p bound to ssRNA and ADP-Beryllium Fluoride | X-RAY DIFFRACTION | 2.1 | 10 | ||
| 2 | 3I5X|1|B | Title: Structure of Mss116p bound to ssRNA and AMP-PNP | X-RAY DIFFRACTION | 1.9 | 10 | ||
| 3 | 3I62|1|B | Title: Structure of Mss116p bound to ssRNA and ADP-Aluminum Fluoride | X-RAY DIFFRACTION | 1.95 | 10 | ||
| 4 | 3I5Y|1|B | Title: Structure of Mss116p bound to ssRNA containing a single 5-BrU and AMP-PNP | X-RAY DIFFRACTION | 2.49 | 9 |
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