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Equivalence class NR_4.0_35391.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14Z4D|1|B+ 4Z4D|1|D (rep)RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*G)-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-G Target RNAX-ray diffraction1.62015-09-23
24Z4E|1|B+ 4Z4E|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*U)-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-U Target RNAX-ray diffraction1.82015-09-23
34W5O|1|B+ 4W5O|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*AP*A)-3')synthetic constructSyntheticThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9X-ray diffraction1.82014-11-12
44Z4C|1|B+ 4Z4C|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*C)-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-C Target RNAX-ray diffraction2.32015-09-23
54Z4H|1|B+ 4Z4H|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3')synthetic constructSyntheticHuman Argonaute2 A481T Mutant Bound to t1-A Target RNAX-ray diffraction2.52015-09-23
66CBD|1|B+ 6CBD|1|CGuide RNA, Target RNAunidentifiedCrystal Structure of Human Argonaute2 Bound to Three TryptophansX-ray diffraction2.22018-04-18
74Z4I|1|B+ 4Z4I|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3')synthetic constructSyntheticHuman Argonaute2 A481T Mutant Bound to t1-G Target RNAX-ray diffraction2.82015-09-23
84Z4G|1|B+ 4Z4G|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-D(P*(IMP))-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-Inosine Target RNAX-ray diffraction2.72015-09-23
94W5T|1|B+ 4W5T|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*UP*U)-3'), RNA (5'-R(*AP*CP*AP*UP*GP*UP*GP*AP*AP*A)-3')synthetic constructSyntheticThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7X-ray diffraction2.52014-11-12
104Z4F|1|B+ 4Z4F|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*(N6G)P*A)-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-DAP Target RNAX-ray diffraction2.82015-09-23
114W5R|1|B+ 4W5R|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*UP*U)-3'), RNA (5'-R(P*AP*AP*UP*GP*UP*GP*AP*AP*A)-3')synthetic constructSyntheticThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target)X-ray diffraction2.52014-11-12
124W5Q|1|B+ 4W5Q|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*U)-3'), RNA (5'-R(*AP*AP*AP*UP*GP*UP*GP*AP*AP*A)-3')synthetic constructSyntheticThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8X-ray diffraction3.12014-11-12

Release history

Release9.159.169.179.189.199.209.219.229.239.24
Date2018-11-092018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_35391.2NR_4.0_35391.19.15(11) 4Z4I|1|B+4Z4I|1|D, 4Z4H|1|B+4Z4H|1|D, 4Z4G|1|B+4Z4G|1|D, 4Z4F|1|B+4Z4F|1|D, 4Z4E|1|B+4Z4E|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4C|1|B+4Z4C|1|D, 4W5T|1|B+4W5T|1|D, 4W5R|1|B+4W5R|1|D, 4W5Q|1|B+4W5Q|1|D, 4W5O|1|B+4W5O|1|D(1) 6CBD|1|B+6CBD|1|C(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14Z4C|1|B+4Z4C|1|DTitle: Human Argonaute2 Bound to t1-C Target RNAX-RAY DIFFRACTION2.319
24Z4E|1|B+4Z4E|1|DTitle: Human Argonaute2 Bound to t1-U Target RNAX-RAY DIFFRACTION1.819
36CBD|1|B+6CBD|1|CTitle: Crystal Structure of Human Argonaute2 Bound to Three TryptophansX-RAY DIFFRACTION2.219
44Z4D|1|B+4Z4D|1|DTitle: Human Argonaute2 Bound to t1-G Target RNAX-RAY DIFFRACTION1.620
54Z4F|1|B+4Z4F|1|DTitle: Human Argonaute2 Bound to t1-DAP Target RNAX-RAY DIFFRACTION2.818
64W5Q|1|B+4W5Q|1|DTitle: The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8X-RAY DIFFRACTION3.118
74W5O|1|B+4W5O|1|DTitle: The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9X-RAY DIFFRACTION1.820
84Z4H|1|B+4Z4H|1|DTitle: Human Argonaute2 A481T Mutant Bound to t1-A Target RNAX-RAY DIFFRACTION2.520
94Z4G|1|B+4Z4G|1|DTitle: Human Argonaute2 Bound to t1-Inosine Target RNAX-RAY DIFFRACTION2.720
104Z4I|1|B+4Z4I|1|DTitle: Human Argonaute2 A481T Mutant Bound to t1-G Target RNAX-RAY DIFFRACTION2.820
114W5R|1|B+4W5R|1|DTitle: The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target)X-RAY DIFFRACTION2.511
124W5T|1|B+4W5T|1|DTitle: The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7X-RAY DIFFRACTION2.516

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