Equivalence class NR_4.0_30869.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5EEU|1|W (rep) | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 1.31 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 2 | 5EEV|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 3.88 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 3 | 5EEX|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 9.02 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 4 | 5EEW|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 6.45 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 5 | 5EEY|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 11.6 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 6 | 5EEZ|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 14.2 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 7 | 5EF0|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 16.7 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 8 | 1GTF|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | The structure of the trp RNA-binding attenuation protein (TRAP) bound to a 53-nucleotide RNA molecule containing GAGUU repeats | X-ray diffraction | 1.75 | 2002-04-05 | ||||
| 9 | 5EF1|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 19.3 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 10 | 5EF2|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 21.9 MGy | X-ray diffraction | 1.98 | 2016-05-04 | ||
| 11 | 5EF3|1|W | (GAGUU)10GAG 53-NUCLEOTIDE RNA | synthetic construct | Synthetic | RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 25.0 MGy | X-ray diffraction | 1.98 | 2016-05-04 |
Release history
| Release | 8.0 | 7.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5EEW|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 6.45 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 2 | 5EF1|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 19.3 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 3 | 5EF2|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 21.9 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 4 | 5EF0|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 16.7 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 5 | 5EEU|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 1.31 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 6 | 5EEX|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 9.02 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 7 | 5EF3|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 25.0 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 8 | 5EEY|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 11.6 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 9 | 5EEZ|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 14.2 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 10 | 5EEV|1|W | Title: RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 3.88 MGy | X-RAY DIFFRACTION | 1.98 | 44 | ||
| 11 | 1GTF|1|W | Title: The structure of the trp RNA-binding attenuation protein (TRAP) bound to a 53-nucleotide RNA molecule containing GAGUU repeats | X-RAY DIFFRACTION | 1.75 | 44 |
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