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Equivalence class NR_4.0_17477.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15J91|1|DA (rep)Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
25J88|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
34V4Q|1|DBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
45J91|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
54V50|1|DBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
64V4Q|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
74V50|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
84V85|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.22014-07-09
95GAD|1|ALarge subunit ribosomal RNA23S rRNA, tRNA CCAendEscherichia coliBacteriaRF02541RNC-SRP-SR complex early stateElectron microscopy3.72016-01-27
105IQR|1|1Large subunit ribosomal RNALSU rRNAEscherichia coliBacteriaRF02541Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
114V6E|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.712014-07-09
124UY8|1|ALarge subunit ribosomal RNARRNA-23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeElectron microscopy3.82014-10-29
135J88|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
145AFI|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025412.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
155JTE|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNAElectron microscopy3.62016-07-20
165JU8|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNAElectron microscopy3.62016-07-20
174V6E|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.712014-07-09
183JCE|1|ALarge subunit ribosomal RNA23 ribosomal RNAEscherichia coliBacteriaRF02541Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
193JCJ|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit associationElectron microscopy3.72016-03-09
205L3P|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complexElectron microscopy3.72016-07-20
213JBV|1|bLarge subunit ribosomal RNARNA (2903-MER)Escherichia coliBacteriaRF02541Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.322016-01-27
223JCD|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)Electron microscopy3.72016-01-13
233JBU|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.642016-01-27

Release history

Release6.0
Date2017-04-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_17477.1NR_4.0_62116.26.0(23) 4UY8|1|A, 4V50|1|DB, 4V4Q|1|DB, 4V6E|1|DA, 4V6E|1|BA, 5JTE|1|BA, 5GAD|1|A, 5J91|1|CA, 3JBV|1|b, 5AFI|1|A, 3JBU|1|b, 5J88|1|DA, 5JU8|1|BA, 3JCJ|1|A, 5IQR|1|1, 3JCD|1|A, 4V4Q|1|BB, 5L3P|1|A, 4V50|1|BB, 4V85|1|BA, 5J91|1|DA, 5J88|1|CA, 3JCE|1|A(0) (76) 4U20|1|BA, 3J9Z|1|LA, 4V9P|1|CA, 4V9D|1|DA, 4V5B|1|AB, 4U26|1|BA, 4V55|1|BB, 5GAG|1|A, 4V6C|1|BA, 4U1V|1|BA, 4U27|1|BA, 3J7Z|1|A, 4V7U|1|BA, 4U24|1|BA, 4V9O|1|GA, 4V54|1|BB, 4WWW|1|YA, 4V9P|1|GA, 5JC9|1|CA, 4V7S|1|BA, 4V64|1|BB, 4WOI|1|CA, 4YBB|1|DA, 4V6D|1|BA, 4V89|1|BA, 4V7T|1|BA, 4U25|1|BA, 4V53|1|BB, 5J8A|1|CA, 4V7V|1|BA, 4V52|1|BB, 4U1U|1|BA, 4V9C|1|DA, 4V9O|1|CA, 4V56|1|BB, 5J8A|1|DA, 4V9O|1|AA, 4V7V|1|DA, 4V55|1|DB, 4U20|1|DA, 4V52|1|DB, 4WWW|1|RA, 4V57|1|DB, 3J9Y|1|A, 4U24|1|DA, 5GAH|1|A, 4V6D|1|DA, 4U1U|1|DA, 4V9D|1|CA, 4V4H|1|DB, 4WF1|1|BA, 4V9O|1|EA, 5GAE|1|A, 4V64|1|DB, 4V56|1|DB, 3JA1|1|LA, 4V9P|1|EA, 4WOI|1|BA, 4V5B|1|CB, 4V7T|1|DA, 4V6C|1|DA, 4U1V|1|DA, 4U27|1|DA, 4YBB|1|CA, 4V7S|1|DA, 4U26|1|DA, 5JC9|1|DA, 4V9C|1|BA, 4V53|1|DB, 4V57|1|BB, 4WF1|1|DA, 4V4H|1|BB, 4V7U|1|DA, 4V54|1|DB, 4V9P|1|AA, 4U25|1|DA

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_17477.1NR_4.0_29951.17.0(23) 5IQR|1|1, 4V4Q|1|BB, 3JBU|1|b, 4V85|1|BA, 5JU8|1|BA, 4V50|1|BB, 3JCE|1|A, 5J88|1|DA, 5GAD|1|A, 4V6E|1|DA, 4UY8|1|A, 3JCD|1|A, 5JTE|1|BA, 5J88|1|CA, 4V4Q|1|DB, 3JCJ|1|A, 5AFI|1|A, 5L3P|1|A, 4V50|1|DB, 5J91|1|DA, 3JBV|1|b, 5J91|1|CA, 4V6E|1|BA(0) (76) 4V6C|1|DA, 4V6D|1|DA, 4WF1|1|BA, 4U20|1|BA, 4U27|1|BA, 4WOI|1|CA, 4U24|1|BA, 4WOI|1|BA, 4V5B|1|CB, 3JA1|1|LA, 4V64|1|DB, 4U1U|1|DA, 4U25|1|BA, 4V9P|1|CA, 4V9P|1|GA, 4V57|1|BB, 4V56|1|DB, 5JC9|1|DA, 4U1V|1|DA, 3J9Y|1|A, 4V9O|1|CA, 4V54|1|BB, 4V9O|1|GA, 4V5B|1|AB, 4V55|1|BB, 5GAH|1|A, 4V9C|1|BA, 4V9D|1|CA, 4V52|1|BB, 4V56|1|BB, 5JC9|1|CA, 3J7Z|1|A, 4V53|1|BB, 4V7U|1|DA, 4V9O|1|AA, 4U26|1|DA, 4V7V|1|DA, 4V53|1|DB, 4U27|1|DA, 5GAG|1|A, 4V7S|1|BA, 5J8A|1|CA, 4V89|1|BA, 4V7T|1|BA, 4U24|1|DA, 4V4H|1|DB, 4WWW|1|RA, 4YBB|1|CA, 4U25|1|DA, 4V6C|1|BA, 4V7U|1|BA, 4U26|1|BA, 4V6D|1|BA, 5GAE|1|A, 4V57|1|DB, 4V55|1|DB, 4V9D|1|DA, 4V9O|1|EA, 4U1U|1|BA, 4V7T|1|DA, 4V52|1|DB, 4YBB|1|DA, 4V7V|1|BA, 4V9P|1|EA, 4U20|1|DA, 4WF1|1|DA, 3J9Z|1|LA, 4V64|1|BB, 4V9P|1|AA, 4U1V|1|BA, 4V54|1|DB, 4V9C|1|DA, 5J8A|1|DA, 4V7S|1|DA, 4V4H|1|BB, 4WWW|1|YA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13JBV|1|bTitle: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.322903
23JCD|1|ATitle: Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.72903
33JCE|1|ATitle: Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.22903
45AFI|1|ATitle: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92876
55IQR|1|1Title: Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY32882
65JTE|1|BATitle: Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNAELECTRON MICROSCOPY3.62897
75JU8|1|BATitle: Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNAELECTRON MICROSCOPY3.62897
84V4Q|1|BBTitle: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
94V50|1|BBTitle: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
104V6E|1|DATitle: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712841
115J88|1|CATitle: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.322876
125J91|1|CATitle: Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962876
134V4Q|1|DBTitle: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
144V50|1|DBTitle: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
155J91|1|DATitle: Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962886
165J88|1|DATitle: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.322886
174V6E|1|BATitle: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712854
184UY8|1|ATitle: Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeELECTRON MICROSCOPY3.82854
193JCJ|1|ATitle: Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit associationELECTRON MICROSCOPY3.72854
204V85|1|BATitle: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22853
215L3P|1|ATitle: Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complexELECTRON MICROSCOPY3.72866
225GAD|1|ATitle: RNC-SRP-SR complex early stateELECTRON MICROSCOPY3.72883
233JBU|1|bTitle: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.642903

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