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Equivalence class NR_4.0_16968.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15J88|1|DB (rep)5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
25AFI|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000012.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
34V6E|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.712014-07-09
45J88|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
55J91|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
65IQR|1|35S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
75JU8|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNAElectron microscopy3.62016-07-20
84V50|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
94V50|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
105GAD|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001RNC-SRP-SR complex early stateElectron microscopy3.72016-01-27
115J91|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
124V6E|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.712014-07-09
135JTE|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNAElectron microscopy3.62016-07-20
144UY8|1|B5S ribosomal RNARRNA-5S RIBOSOMAL RNAEscherichia coliBacteriaRF00001Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeElectron microscopy3.82014-10-29
154V4Q|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
164V4Q|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
174V85|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.22014-07-09
183JCJ|1|05S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit associationElectron microscopy3.72016-03-09
193JCD|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)Electron microscopy3.72016-01-13
203JCE|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
213JBV|1|a5S ribosomal RNARNA (118-MER)Escherichia coliBacteriaRF00001Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.322016-01-27
225L3P|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complexElectron microscopy3.72016-07-20
233JBU|1|a5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.642016-01-27

Release history

Release6.0
Date2017-04-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_16968.1NR_4.0_37074.26.0(23) 4V50|1|DA, 5JU8|1|BB, 4V50|1|BA, 5JTE|1|BB, 4V85|1|BB, 4V6E|1|DB, 5L3P|1|B, 3JCD|1|B, 5AFI|1|B, 3JBV|1|a, 4UY8|1|B, 5J88|1|CB, 3JCE|1|B, 5IQR|1|3, 5J91|1|DB, 4V4Q|1|BA, 5J91|1|CB, 4V4Q|1|DA, 4V6E|1|BB, 5GAD|1|B, 3JBU|1|a, 5J88|1|DB, 3JCJ|1|0(0) (76) 5GAG|1|B, 4V7S|1|BB, 4V9C|1|DB, 4V52|1|BA, 4V7U|1|BB, 4V54|1|BA, 4V56|1|BA, 5JC9|1|CB, 4U20|1|BB, 4V9O|1|CB, 3J9Z|1|LB, 4V89|1|BB, 4V9P|1|CB, 4V53|1|BA, 4V5B|1|AA, 4U25|1|BB, 5J8A|1|CB, 4U1V|1|BB, 4V9D|1|DB, 4WF1|1|DB, 4V9O|1|GB, 4V6C|1|BB, 4V57|1|BA, 4U24|1|BB, 4U1U|1|BB, 4U26|1|BB, 4V9P|1|GB, 4WOI|1|CB, 4V64|1|BA, 4V6D|1|BB, 4V4H|1|BA, 4YBB|1|DB, 4V7T|1|BB, 4V7V|1|BB, 4U27|1|BB, 4V55|1|BA, 4WWW|1|YB, 3J7Z|1|B, 4V6D|1|DB, 4V4H|1|DA, 4WWW|1|RB, 4V53|1|DA, 5GAE|1|B, 3JA1|1|LB, 4V9C|1|BB, 5J8A|1|DB, 4V7T|1|DB, 4V9O|1|AB, 4U27|1|DB, 4V55|1|DA, 4U1V|1|DB, 4YBB|1|CB, 3J9Y|1|B, 4V7V|1|DB, 4V9P|1|AB, 4V9D|1|CB, 4V57|1|DA, 4V54|1|DA, 4V64|1|DA, 4U1U|1|DB, 4U26|1|DB, 5JC9|1|DB, 4U20|1|DB, 4V9O|1|EB, 4V9P|1|EB, 4V56|1|DA, 4V5B|1|CA, 4U25|1|DB, 4WOI|1|BB, 4V6C|1|DB, 4V7S|1|DB, 4U24|1|DB, 4V52|1|DA, 4WF1|1|BB, 5GAH|1|B, 4V7U|1|DB

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_16968.1NR_4.0_91789.17.0(23) 4V50|1|DA, 5J91|1|CB, 4V4Q|1|BA, 3JBU|1|a, 5IQR|1|3, 4V6E|1|DB, 5JTE|1|BB, 4V50|1|BA, 3JCD|1|B, 5J88|1|DB, 3JCJ|1|0, 5GAD|1|B, 4V6E|1|BB, 5J91|1|DB, 3JBV|1|a, 4V4Q|1|DA, 5J88|1|CB, 4V85|1|BB, 5L3P|1|B, 3JCE|1|B, 5JU8|1|BB, 4UY8|1|B, 5AFI|1|B(0) (76) 4V57|1|BA, 4V6D|1|BB, 3J7Z|1|B, 4V53|1|BA, 4U20|1|BB, 4V9O|1|EB, 4WOI|1|BB, 4V54|1|DA, 4V7V|1|DB, 4V5B|1|CA, 5J8A|1|CB, 4U1U|1|BB, 4V9C|1|DB, 4V9P|1|CB, 4V7T|1|BB, 4V52|1|DA, 4V56|1|DA, 5JC9|1|DB, 4U1V|1|DB, 4YBB|1|CB, 4V7V|1|BB, 4V9O|1|CB, 4U27|1|BB, 4V54|1|BA, 5GAH|1|B, 3JA1|1|LB, 4V7S|1|DB, 4V9C|1|BB, 4U25|1|BB, 4V52|1|BA, 4WWW|1|YB, 5JC9|1|CB, 4V6C|1|DB, 4V7U|1|DB, 4U26|1|DB, 4WF1|1|DB, 5GAG|1|B, 4V5B|1|AA, 4V7S|1|BB, 4U24|1|DB, 4V4H|1|DA, 4V9P|1|AB, 4V56|1|BA, 4V6C|1|BB, 4U1V|1|BB, 4V9O|1|AB, 4WF1|1|BB, 4V53|1|DA, 3J9Z|1|LB, 4U24|1|BB, 4V89|1|BB, 4V55|1|DA, 4V64|1|DA, 4V7U|1|BB, 4V9D|1|DB, 4U26|1|BB, 4V57|1|DA, 5GAE|1|B, 3J9Y|1|B, 4V9O|1|GB, 4V4H|1|BA, 4V55|1|BA, 4WWW|1|RB, 5J8A|1|DB, 4V7T|1|DB, 4V9D|1|CB, 4V9P|1|GB, 4YBB|1|DB, 4V6D|1|DB, 4U20|1|DB, 4U27|1|DB, 4WOI|1|CB, 4V64|1|BA, 4U1U|1|DB, 4U25|1|DB, 4V9P|1|EB

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13JBU|1|aTitle: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.64118
23JBV|1|aTitle: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.32117
34V4Q|1|DATitle: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
44V50|1|DATitle: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
54V50|1|BATitle: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
64V4Q|1|BATitle: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
74V6E|1|DBTitle: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.71117
83JCJ|1|0Title: Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit associationELECTRON MICROSCOPY3.7118
94UY8|1|BTitle: Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeELECTRON MICROSCOPY3.8118
104V85|1|BBTitle: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.2118
114V6E|1|BBTitle: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.71118
125J88|1|DBTitle: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.32120
135J91|1|DBTitle: Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96120
145J91|1|CBTitle: Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96118
155J88|1|CBTitle: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.32118
165JTE|1|BBTitle: Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNAELECTRON MICROSCOPY3.6118
175JU8|1|BBTitle: Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNAELECTRON MICROSCOPY3.6118
185IQR|1|3Title: Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY3118
195AFI|1|BTitle: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.9120
205L3P|1|BTitle: Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complexELECTRON MICROSCOPY3.7120
215GAD|1|BTitle: RNC-SRP-SR complex early stateELECTRON MICROSCOPY3.7120
223JCE|1|BTitle: Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.2118
233JCD|1|BTitle: Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.7118

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