Equivalence class NR_4.0_10718.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V9F|1|0 (rep) | Large subunit ribosomal RNA | 23S Ribosomal RNA | Haloarcula marismortui | Archaea | RF02540 | The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins | X-ray diffraction | 2.4 | 2014-07-09 |
| 2 | 1S72|1|0 | Large subunit ribosomal RNA | 23S ribosomal RNA | Haloarcula marismortui | Archaea | RF02540 | REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION | X-ray diffraction | 2.4 | 2004-06-15 |
| 3 | 1VQ6|1|0 | Large subunit ribosomal RNA | 23S ribosomal rna, 5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3' | Haloarcula marismortui | Archaea | RF02540 | The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui | X-ray diffraction | 2.7 | 2005-11-29 |
| 4 | 1VQM|1|0 | Large subunit ribosomal RNA | 23S ribosomal rna | Haloarcula marismortui | Archaea | RF02540 | The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui | X-ray diffraction | 2.3 | 2005-11-29 |
| 5 | 1QVF|1|0 | Large subunit ribosomal RNA | 23S ribosomal rna | Haloarcula marismortui | Archaea | RF02540 | Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui | X-ray diffraction | 3.1 | 2003-11-11 |
| 6 | 1VQL|1|0 | Large subunit ribosomal RNA | 23S ribosomal rna | Haloarcula marismortui | Archaea | RF02540 | The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui | X-ray diffraction | 2.3 | 2005-11-29 |
| 7 | 1VQN|1|0 | Large subunit ribosomal RNA | 23S ribosomal rna, 5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3' | Haloarcula marismortui | Archaea | RF02540 | The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui | X-ray diffraction | 2.4 | 2005-11-29 |
| 8 | 3CMA|1|0 | Large subunit ribosomal RNA | 23S RIBOSOMAL RNA, RNA (5'-R(*CP*CP*(8AN))-3') | Haloarcula marismortui | Archaea | RF02540 | The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui | X-ray diffraction | 2.8 | 2008-09-23 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_10718.1 | NR_4.0_65634.1 | 6.0 | (8) 1VQN|1|0, 1VQL|1|0, 3CMA|1|0, 1VQ6|1|0, 1QVF|1|0, 1VQM|1|0, 4V9F|1|0, 1S72|1|0 | (0) | (61) 1K8A|1|A, 1YIT|1|0, 3CCV|1|0, 1QVG|1|0, 3CCL|1|0, 2QA4|1|0, 1FG0|1|A, 1VQ7|1|0, 1Q81|1|A, 1KD1|1|A, 1YJW|1|0, 3CPW|1|0, 3CCR|1|0, 1N8R|1|A, 1VQP|1|0, 3CCM|1|0, 1NJI|1|A, 3CC2|1|0, 1YJ9|1|0, 3I55|1|0, 1Q82|1|A, 1M1K|1|A, 1JJ2|1|0, 1YI2|1|0, 3CCS|1|0, 3CCE|1|0, 1KC8|1|A, 1FFK|1|0, 3CC4|1|0, 1W2B|1|0, 1M90|1|A, 3I56|1|0, 1VQK|1|0, 3CCJ|1|0, 3G6E|1|0, 1VQ8|1|0, 1K9M|1|A, 2OTJ|1|0, 3CXC|1|0, 1VQ4|1|0, 2QEX|1|0, 3CD6|1|0, 1Q86|1|A, 1FFZ|1|A, 1YIJ|1|0, 3CCU|1|0, 1Q7Y|1|A, 1YJN|1|0, 3CCQ|1|0, 3G71|1|0, 1VQO|1|0, 1KQS|1|0, 1YHQ|1|0, 3CC7|1|0, 3OW2|1|0, 3CME|1|0, 1VQ5|1|0, 1K73|1|A, 1VQ9|1|0, 2OTL|1|0, 3G4S|1|0 |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_10718.1 | NR_4.0_52487.1 | 7.0 | (8) 1VQM|1|0, 4V9F|1|0, 1QVF|1|0, 1VQL|1|0, 3CMA|1|0, 1VQ6|1|0, 1VQN|1|0, 1S72|1|0 | (0) | (61) 3CD6|1|0, 3CCM|1|0, 2QEX|1|0, 1YJ9|1|0, 1VQP|1|0, 1N8R|1|A, 1K9M|1|A, 3CXC|1|0, 3CCS|1|0, 3CCE|1|0, 1YHQ|1|0, 1VQ8|1|0, 1KQS|1|0, 1JJ2|1|0, 3I55|1|0, 3CCL|1|0, 3CC2|1|0, 1VQO|1|0, 1VQ4|1|0, 1NJI|1|A, 1FFK|1|0, 3G4S|1|0, 3CC7|1|0, 2OTJ|1|0, 1YI2|1|0, 1Q82|1|A, 1M1K|1|A, 3G71|1|0, 3CCV|1|0, 2QA4|1|0, 1YIT|1|0, 1M90|1|A, 1K8A|1|A, 3OW2|1|0, 3CPW|1|0, 3CCR|1|0, 1W2B|1|0, 1VQ7|1|0, 1KD1|1|A, 1FG0|1|A, 3CCJ|1|0, 1VQK|1|0, 1QVG|1|0, 3CC4|1|0, 1YJW|1|0, 1Q81|1|A, 3G6E|1|0, 3CCU|1|0, 2OTL|1|0, 1YIJ|1|0, 1K73|1|A, 3I56|1|0, 3CME|1|0, 3CCQ|1|0, 1VQ5|1|0, 1KC8|1|A, 1FFZ|1|A, 1VQ9|1|0, 1Q86|1|A, 1YJN|1|0, 1Q7Y|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4V9F|1|0 | Title: The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins | X-RAY DIFFRACTION | 2.4 | 2803 | ||
| 2 | 1S72|1|0 | Title: REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 2.4 | 2749 | ||
| 3 | 1QVF|1|0 | Title: Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui | X-RAY DIFFRACTION | 3.1 | 2754 | ||
| 4 | 1VQ6|1|0 | Title: The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui | X-RAY DIFFRACTION | 2.7 | 2749 | ||
| 5 | 1VQL|1|0 | Title: The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui | X-RAY DIFFRACTION | 2.3 | 2749 | ||
| 6 | 1VQM|1|0 | Title: The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui | X-RAY DIFFRACTION | 2.3 | 2749 | ||
| 7 | 1VQN|1|0 | Title: The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui | X-RAY DIFFRACTION | 2.4 | 2749 | ||
| 8 | 3CMA|1|0 | Title: The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui | X-RAY DIFFRACTION | 2.8 | 2749 |
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