Equivalence class NR_4.0_07171.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5D8T|1|A+ 5D8T|1|B (rep) | RNA oligonucleotide containing (S)-C5'-Me-2'-FU | synthetic construct | Synthetic | RNA octamer containing (S)-5' methyl, 2'-F U. | X-ray diffraction | 1.2 | 2016-06-29 | ||
| 2 | 5VR4|1|C+ 5VR4|1|D | RNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3') | synthetic construct | Synthetic | RNA octamer containing 2'-F-4'-OMe U. | X-ray diffraction | 1.5 | 2017-10-04 | ||
| 3 | 5VR4|1|A+ 5VR4|1|B | RNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3') | synthetic construct | Synthetic | RNA octamer containing 2'-F-4'-OMe U. | X-ray diffraction | 1.5 | 2017-10-04 | ||
| 4 | 5DER|1|A+ 5DER|1|B | RNA oligonucleotide containing (R)-C5'-Me-2'-FU | synthetic construct | Synthetic | RNA oligonucleotide containing (R)-C5'-ME-2'F U | X-ray diffraction | 1.8 | 2016-06-29 | ||
| 5 | 5DER|1|C+ 5DER|1|D | RNA oligonucleotide containing (R)-C5'-Me-2'-FU | synthetic construct | Synthetic | RNA oligonucleotide containing (R)-C5'-ME-2'F U | X-ray diffraction | 1.8 | 2016-06-29 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_07171.1 | NR_4.0_57941.1 | 9.16 | (5) 5VR4|1|A+5VR4|1|B, 5VR4|1|C+5VR4|1|D, 5D8T|1|A+5D8T|1|B, 5DER|1|A+5DER|1|B, 5DER|1|C+5DER|1|D | (0) | (10) 6CY0|1|C+6CY0|1|D, 6CY4|1|E+6CY4|1|F, 6CXZ|1|A+6CXZ|1|B, 6CY4|1|A+6CY4|1|B, 6CY0|1|A+6CY0|1|B, 6CY4|1|C+6CY4|1|D, 6CY2|1|A+6CY2|1|B, 6CY0|1|G+6CY0|1|H, 6CY4|1|G+6CY4|1|H, 6CY0|1|E+6CY0|1|F |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5D8T|1|A+5D8T|1|B | Title: RNA octamer containing (S)-5' methyl, 2'-F U. | X-RAY DIFFRACTION | 1.2 | 6 | ||
| 2 | 5DER|1|C+5DER|1|D | Title: RNA oligonucleotide containing (R)-C5'-ME-2'F U | X-RAY DIFFRACTION | 1.8 | 7 | ||
| 3 | 5DER|1|A+5DER|1|B | Title: RNA oligonucleotide containing (R)-C5'-ME-2'F U | X-RAY DIFFRACTION | 1.8 | 7 | ||
| 4 | 5VR4|1|C+5VR4|1|D | Title: RNA octamer containing 2'-F-4'-OMe U. | X-RAY DIFFRACTION | 1.5 | 7 | ||
| 5 | 5VR4|1|A+5VR4|1|B | Title: RNA octamer containing 2'-F-4'-OMe U. | X-RAY DIFFRACTION | 1.5 | 7 |
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