NR_4.0_06154.1

Members (12)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5FJC\|1\|A (rep)	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU	X-ray diffraction	1.71	2016-05-25
2	5FK4\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU	X-ray diffraction	2.43	2016-05-25
3	5FKE\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU	X-ray diffraction	2.8	2016-05-25
4	5FK2\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG	X-ray diffraction	2.6	2016-05-25
5	5FK3\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC	X-ray diffraction	2.5	2016-05-25
6	5FK1\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG	X-ray diffraction	2.5	2016-05-25
7	5FK5\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA	X-ray diffraction	3.32	2016-05-25
8	5FKF\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC	X-ray diffraction	2.8	2016-05-25
9	5FKD\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA	X-ray diffraction	3	2016-05-25
10	5FKG\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG	X-ray diffraction	2.95	2016-05-25
11	5FKH\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU	X-ray diffraction	2.65	2016-05-25
12	5FK6\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA	X-ray diffraction	2.5	2016-05-25

Release history

Release	3.0	4.0	5.0
Date	2016-07-25	2016-07-25	2016-07-25

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_06154.1	NR_4.0_94764.1	6.0	(1) 5FJC\|1\|A	(11) 5FK1\|1\|A, 5FK2\|1\|A, 5FK3\|1\|A, 5FK4\|1\|A, 5FK5\|1\|A, 5FK6\|1\|A, 5FKD\|1\|A, 5FKE\|1\|A, 5FKF\|1\|A, 5FKG\|1\|A, 5FKH\|1\|A	(1) 4B5R\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5FKF\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC	X-RAY DIFFRACTION	2.8	94
2	5FK1\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG	X-RAY DIFFRACTION	2.5	94
3	5FK3\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC	X-RAY DIFFRACTION	2.5	95
4	5FK2\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG	X-RAY DIFFRACTION	2.6	94
5	5FKH\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU	X-RAY DIFFRACTION	2.65	94
6	5FKD\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA	X-RAY DIFFRACTION	3	94
7	5FK6\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA	X-RAY DIFFRACTION	2.5	94
8	5FKE\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU	X-RAY DIFFRACTION	2.8	94
9	5FKG\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG	X-RAY DIFFRACTION	2.95	94
10	5FK5\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA	X-RAY DIFFRACTION	3.32	94
11	5FK4\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU	X-RAY DIFFRACTION	2.43	93
12	5FJC\|1\|A	Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU	X-RAY DIFFRACTION	1.71	96

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_06154.1 Obsolete

Release history

Parents

Children